BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
aly-miR163-5p.1 MIMAT0017677 Arabidopsis lyrata miR163-5p.1 14 20
ata-miR169g-3p MIMAT0037087 Aegilops tauschii miR169g-3p 12 80
bta-miR-4444 MIMAT0036978 Bos taurus miR-4444 12 80
bra-miR9563b-5p MIMAT0035695 Brassica rapa miR9563b-5p 12 80
efu-miR-9230c MIMAT0034837 Eptesicus fuscus miR-9230c 12 80
str-miR-76-5p MIMAT0033414 Strongyloides ratti miR-76-5p 12 80
ppc-miR-2253c-5p MIMAT0033001 Pristionchus pacificus miR-2253c-5p 12 80
prd-miR-7950a-5p MIMAT0030770 Panagrellus redivivus miR-7950a-5p 12 80
prd-miR-7950c-5p MIMAT0030712 Panagrellus redivivus miR-7950c-5p 12 80
ghr-miR7500 MIMAT0029147 Gossypium hirsutum miR7500 12 80
mmu-miR-6941-3p MIMAT0027783 Mus musculus miR-6941-3p 12 80
hsa-miR-6750-3p MIMAT0027401 Homo sapiens miR-6750-3p 12 80
rno-miR-6323 MIMAT0025062 Rattus norvegicus miR-6323 12 80
nta-miR6161d MIMAT0024773 Nicotiana tabacum miR6161d 12 80
nta-miR1446 MIMAT0024763 Nicotiana tabacum miR1446 12 80
aca-miR-5455-3p MIMAT0022082 Anolis carolinensis miR-5455-3p 12 80
gma-miR159f-5p MIMAT0021642 Glycine max miR159f-5p 12 80
bdi-miR169a-3p MIMAT0027068 Brachypodium distachyon miR169a-3p 12 80
hsa-miR-4636 MIMAT0019693 Homo sapiens miR-4636 12 80
hsa-miR-4444 MIMAT0018962 Homo sapiens miR-4444 12 80
csi-miR3953 MIMAT0018496 Citrus sinensis miR3953 12 80
tca-miR-3829-5p MIMAT0018688 Tribolium castaneum miR-3829-5p 12 80
aly-miR4221 MIMAT0017909 Arabidopsis lyrata miR4221 12 80
hsa-miR-3168 MIMAT0015043 Homo sapiens miR-3168 12 80
dsi-miR-983a-3p MIMAT0012526 Drosophila simulans miR-983a-3p 12 80
dsi-miR-969-5p MIMAT0012479 Drosophila simulans miR-969-5p 12 80
dps-miR-969-5p MIMAT0012275 Drosophila pseudoobscura miR-969-5p 12 80
crm-miR-67-5p MIMAT0011595 Caenorhabditis remanei miR-67-5p 12 80
hsv2-miR-H4-5p MIMAT0010203 Herpes Simplex miR-H4-5p 12 80
mmu-miR-1897-3p MIMAT0007865 Mus musculus miR-1897-3p 12 80
gma-miR159b-5p MIMAT0020934 Glycine max miR159b-5p 12 80
dme-miR-969-5p MIMAT0005485 Drosophila melanogaster miR-969-5p 12 80
>aly-miR163-5p.1 MIMAT0017677 Arabidopsis lyrata miR163-5p.1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgagttc 7
|||||||
Sbjct: 1 cgagttc 7
>ata-miR169g-3p MIMAT0037087 Aegilops tauschii miR169g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagtt 6
||||||
Sbjct: 3 cgagtt 8
>bta-miR-4444 MIMAT0036978 Bos taurus miR-4444
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagtt 6
||||||
Sbjct: 3 cgagtt 8
>bra-miR9563b-5p MIMAT0035695 Brassica rapa miR9563b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagttc 7
||||||
Sbjct: 8 gagttc 3
>efu-miR-9230c MIMAT0034837 Eptesicus fuscus miR-9230c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagttc 7
||||||
Sbjct: 7 gagttc 2
>str-miR-76-5p MIMAT0033414 Strongyloides ratti miR-76-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagtt 6
||||||
Sbjct: 1 cgagtt 6
>ppc-miR-2253c-5p MIMAT0033001 Pristionchus pacificus
miR-2253c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 3 gagttc 8
>prd-miR-7950a-5p MIMAT0030770 Panagrellus redivivus
miR-7950a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>prd-miR-7950c-5p MIMAT0030712 Panagrellus redivivus
miR-7950c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>ghr-miR7500 MIMAT0029147 Gossypium hirsutum miR7500
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagtt 6
||||||
Sbjct: 3 cgagtt 8
>mmu-miR-6941-3p MIMAT0027783 Mus musculus miR-6941-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagtt 6
||||||
Sbjct: 8 cgagtt 3
>hsa-miR-6750-3p MIMAT0027401 Homo sapiens miR-6750-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagttc 7
||||||
Sbjct: 6 gagttc 1
>rno-miR-6323 MIMAT0025062 Rattus norvegicus miR-6323
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagttc 7
||||||
Sbjct: 8 gagttc 3
>nta-miR6161d MIMAT0024773 Nicotiana tabacum miR6161d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagttc 7
||||||
Sbjct: 7 gagttc 2
>nta-miR1446 MIMAT0024763 Nicotiana tabacum miR1446
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagttc 7
||||||
Sbjct: 7 gagttc 2
>aca-miR-5455-3p MIMAT0022082 Anolis carolinensis miR-5455-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>gma-miR159f-5p MIMAT0021642 Glycine max miR159f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>bdi-miR169a-3p MIMAT0027068 Brachypodium distachyon miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagtt 6
||||||
Sbjct: 3 cgagtt 8
>hsa-miR-4636 MIMAT0019693 Homo sapiens miR-4636
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagtt 6
||||||
Sbjct: 6 cgagtt 1
>hsa-miR-4444 MIMAT0018962 Homo sapiens miR-4444
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgagtt 6
||||||
Sbjct: 3 cgagtt 8
>csi-miR3953 MIMAT0018496 Citrus sinensis miR3953
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 3 gagttc 8
>tca-miR-3829-5p MIMAT0018688 Tribolium castaneum miR-3829-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 3 gagttc 8
>aly-miR4221 MIMAT0017909 Arabidopsis lyrata miR4221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 3 gagttc 8
>hsa-miR-3168 MIMAT0015043 Homo sapiens miR-3168
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>dsi-miR-983a-3p MIMAT0012526 Drosophila simulans miR-983a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 3 gagttc 8
>dsi-miR-969-5p MIMAT0012479 Drosophila simulans miR-969-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>dps-miR-969-5p MIMAT0012275 Drosophila pseudoobscura miR-969-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>crm-miR-67-5p MIMAT0011595 Caenorhabditis remanei miR-67-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagtt 6
||||||
Sbjct: 6 cgagtt 1
>hsv2-miR-H4-5p MIMAT0010203 Herpes Simplex miR-H4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>mmu-miR-1897-3p MIMAT0007865 Mus musculus miR-1897-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgagtt 6
||||||
Sbjct: 8 cgagtt 3
>gma-miR159b-5p MIMAT0020934 Glycine max miR159b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
>dme-miR-969-5p MIMAT0005485 Drosophila melanogaster miR-969-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagttc 7
||||||
Sbjct: 1 gagttc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 47
Number of extensions: 46
Number of successful extensions: 32
Number of sequences better than 100.0: 32
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 32
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
