BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b8-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p 14 27
prd-miR-7897-3p MIMAT0030587 Panagrellus redivivus miR-7897-3p 14 27
bdi-miR7741-3p.1 MIMAT0030223 Brachypodium distachyon miR7741-3p.1 14 27
cin-miR-4084-5p MIMAT0016657 Ciona intestinalis miR-4084-5p 14 27
bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842 14 27
sme-miR-61b-5p MIMAT0012132 Schmidtea mediterranea miR-61b-5p 14 27
osa-miR1861n MIMAT0007809 Oryza sativa miR1861n 14 27
osa-miR1861l MIMAT0007807 Oryza sativa miR1861l 14 27
osa-miR1861i MIMAT0007804 Oryza sativa miR1861i 14 27
osa-miR1861f MIMAT0007801 Oryza sativa miR1861f 14 27
osa-miR1861c MIMAT0007798 Oryza sativa miR1861c 14 27
osa-miR1861b MIMAT0007797 Oryza sativa miR1861b 14 27
kshv-miR-K12-2-3p MIMAT0015215 Kaposi sarcoma-associated miR-K12... 14 27
>hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatcttc 8
|||||||
Sbjct: 1 gatcttc 7
>prd-miR-7897-3p MIMAT0030587 Panagrellus redivivus miR-7897-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgatctt 7
|||||||
Sbjct: 7 cgatctt 1
>bdi-miR7741-3p.1 MIMAT0030223 Brachypodium distachyon
miR7741-3p.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatcttc 8
|||||||
Sbjct: 2 gatcttc 8
>cin-miR-4084-5p MIMAT0016657 Ciona intestinalis miR-4084-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatcttc 8
|||||||
Sbjct: 2 gatcttc 8
>bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatcttc 8
|||||||
Sbjct: 8 gatcttc 2
>sme-miR-61b-5p MIMAT0012132 Schmidtea mediterranea miR-61b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgatctt 7
|||||||
Sbjct: 7 cgatctt 1
>osa-miR1861n MIMAT0007809 Oryza sativa miR1861n
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgatctt 7
|||||||
Sbjct: 1 cgatctt 7
>osa-miR1861l MIMAT0007807 Oryza sativa miR1861l
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgatctt 7
|||||||
Sbjct: 1 cgatctt 7
>osa-miR1861i MIMAT0007804 Oryza sativa miR1861i
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgatctt 7
|||||||
Sbjct: 1 cgatctt 7
>osa-miR1861f MIMAT0007801 Oryza sativa miR1861f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgatctt 7
|||||||
Sbjct: 1 cgatctt 7
>osa-miR1861c MIMAT0007798 Oryza sativa miR1861c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgatctt 7
|||||||
Sbjct: 1 cgatctt 7
>osa-miR1861b MIMAT0007797 Oryza sativa miR1861b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgatctt 7
|||||||
Sbjct: 1 cgatctt 7
>kshv-miR-K12-2-3p MIMAT0015215 Kaposi sarcoma-associated
miR-K12-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatcttc 8
|||||||
Sbjct: 1 gatcttc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 104
Number of extensions: 91
Number of successful extensions: 78
Number of sequences better than 100.0: 13
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
