BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-14-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR164c-3p MIMAT0027084 Brachypodium distachyon miR164c-3p 14 20
rlcv-miR-rL1-14-3p MIMAT0003445 Rhesus lymphocryptovirus miR-rL1... 14 20
ata-miR9776-3p MIMAT0037217 Aegilops tauschii miR9776-3p 12 80
tae-miR9775 MIMAT0036986 Triticum aestivum miR9775 12 80
oha-miR-455-5p MIMAT0036931 Ophiophagus hannah miR-455-5p 12 80
chi-miR-455-5p MIMAT0036241 Capra hircus miR-455-5p 12 80
efu-miR-323 MIMAT0035030 Eptesicus fuscus miR-323 12 80
eca-miR-8916 MIMAT0034444 Equus caballus miR-8916 12 80
ppc-miR-8352-5p MIMAT0033256 Pristionchus pacificus miR-8352-5p 12 80
ath-miR8173 MIMAT0032772 Arabidopsis thaliana miR8173 12 80
ssa-miR-8157-5p MIMAT0032736 Salmo salar miR-8157-5p 12 80
ssa-miR-455-5p MIMAT0032643 Salmo salar miR-455-5p 12 80
bbe-miR-2070-3p MIMAT0031637 Branchiostoma belcheri miR-2070-3p 12 80
ptc-miR7838 MIMAT0030394 Populus trichocarpa miR7838 12 80
ipu-miR-455b MIMAT0029513 Ictalurus punctatus miR-455b 12 80
ipu-miR-455a MIMAT0029512 Ictalurus punctatus miR-455a 12 80
gga-miR-7472-5p MIMAT0029098 Gallus gallus miR-7472-5p 12 80
oan-miR-7409-3p MIMAT0028965 Ornithorhynchus anatinus miR-7409-3p 12 80
mdo-miR-7308-5p MIMAT0028614 Monodelphis domestica miR-7308-5p 12 80
ccr-miR-455 MIMAT0026301 Cyprinus carpio miR-455 12 80
prv-miR-LLT3 MIMAT0025306 Pseudorabies virus miR-LLT3 12 80
mse-miR-210 MIMAT0024420 Manduca sexta miR-210 12 80
cgr-miR-455-5p MIMAT0023964 Cricetulus griseus miR-455-5p 12 80
hco-miR-5352 MIMAT0023381 Haemonchus contortus miR-5352 12 80
ola-miR-210-3p MIMAT0022661 Oryzias latipes miR-210-3p 12 80
ola-miR-455-5p MIMAT0022607 Oryzias latipes miR-455-5p 12 80
cin-miR-5601-5p MIMAT0022325 Ciona intestinalis miR-5601-5p 12 80
aca-miR-455-5p MIMAT0021964 Anolis carolinensis miR-455-5p 12 80
asu-miR-5352-3p MIMAT0021563 Ascaris suum miR-5352-3p 12 80
pma-miR-1a-5p MIMAT0019364 Petromyzon marinus miR-1a-5p 12 80
hsa-miR-550b-2-5p MIMAT0022737 Homo sapiens miR-550b-2-5p 12 80
tca-miR-3806-3p MIMAT0018635 Tribolium castaneum miR-3806-3p 12 80
cin-let-7f-3p MIMAT0016843 Ciona intestinalis let-7f-3p 12 80
ppy-miR-933 MIMAT0016134 Pongo pygmaeus miR-933 12 80
ppy-miR-455-5p MIMAT0015899 Pongo pygmaeus miR-455-5p 12 80
bmo-miR-3297-5p MIMAT0015485 Bombyx mori miR-3297-5p 12 80
tgu-miR-455-5p MIMAT0014655 Taeniopygia guttata miR-455-5p 12 80
cqu-miR-210-3p MIMAT0014397 Culex quinquefasciatus miR-210-3p 12 80
cqu-miR-305-3p MIMAT0014383 Culex quinquefasciatus miR-305-3p 12 80
aae-miR-210 MIMAT0014293 Aedes aegypti miR-210 12 80
aae-miR-305-3p MIMAT0014250 Aedes aegypti miR-305-3p 12 80
ssc-miR-455-5p MIMAT0022957 Sus scrofa miR-455-5p 12 80
mdo-miR-455-5p MIMAT0012752 Monodelphis domestica miR-455-5p 12 80
mdo-miR-210-3p MIMAT0012750 Monodelphis domestica miR-210-3p 12 80
bmo-miR-2798 MIMAT0013702 Bombyx mori miR-2798 12 80
cel-miR-2216-5p MIMAT0011447 Caenorhabditis elegans miR-2216-5p 12 80
dre-miR-455-2-5p MIMAT0011302 Danio rerio miR-455-2-5p 12 80
sme-miR-2161-3p MIMAT0011255 Schmidtea mediterranea miR-2161-3p 12 80
lmi-miR-210-3p MIMAT0010143 Locusta migratoria miR-210-3p 12 80
bfl-miR-2070-3p MIMAT0019171 Branchiostoma floridae miR-2070-3p 12 80
cfa-miR-210 MIMAT0009846 Canis familiaris miR-210 12 80
nve-miR-2024f-3p MIMAT0009769 Nematostella vectensis miR-2024f-3p 12 80
nve-miR-2024e-3p MIMAT0009767 Nematostella vectensis miR-2024e-3p 12 80
cte-miR-210a MIMAT0009534 Capitella teleta miR-210a 12 80
bta-miR-323 MIMAT0009284 Bos taurus miR-323 12 80
dvi-miR-305-3p MIMAT0032066 Drosophila virilis miR-305-3p 12 80
ptr-miR-933 MIMAT0008340 Pan troglodytes miR-933 12 80
cfa-miR-455 MIMAT0006603 Canis familiaris miR-455 12 80
mml-miR-933 MIMAT0006535 Macaca mulatta miR-933 12 80
mml-miR-455-5p MIMAT0006339 Macaca mulatta miR-455-5p 12 80
gga-miR-1563 MIMAT0007422 Gallus gallus miR-1563 12 80
rno-miR-455-5p MIMAT0005316 Rattus norvegicus miR-455-5p 12 80
hsa-miR-933 MIMAT0004976 Homo sapiens miR-933 12 80
ptc-miR403c-5p MIMAT0022932 Populus trichocarpa miR403c-5p 12 80
bta-miR-455-5p MIMAT0003835 Bos taurus miR-455-5p 12 80
bta-miR-210 MIMAT0003824 Bos taurus miR-210 12 80
xtr-miR-455 MIMAT0003641 Xenopus tropicalis miR-455 12 80
mmu-miR-455-5p MIMAT0003485 Mus musculus miR-455-5p 12 80
gga-miR-455-5p MIMAT0003364 Gallus gallus miR-455-5p 12 80
hsa-miR-455-5p MIMAT0003150 Homo sapiens miR-455-5p 12 80
rno-miR-1-5p MIMAT0003162 Rattus norvegicus miR-1-5p 12 80
tni-miR-455 MIMAT0003029 Tetraodon nigroviridis miR-455 12 80
fru-miR-455 MIMAT0003028 Fugu rubripes miR-455 12 80
ssc-miR-323 MIMAT0002139 Sus scrofa miR-323 12 80
dre-miR-455-5p MIMAT0001879 Danio rerio miR-455-5p 12 80
zma-miR164b-3p MIMAT0015138 Zea mays miR164b-3p 12 80
dme-miR-305-3p MIMAT0020827 Drosophila melanogaster miR-305-3p 12 80
dme-miR-210-3p MIMAT0000355 Drosophila melanogaster miR-210-3p 12 80
>bdi-miR164c-3p MIMAT0027084 Brachypodium distachyon miR164c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcacat 7
|||||||
Sbjct: 8 cgcacat 2
>rlcv-miR-rL1-14-3p MIMAT0003445 Rhesus lymphocryptovirus
miR-rL1-14-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgcacat 7
|||||||
Sbjct: 2 cgcacat 8
>ata-miR9776-3p MIMAT0037217 Aegilops tauschii miR9776-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 1 gcacat 6
>tae-miR9775 MIMAT0036986 Triticum aestivum miR9775
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>oha-miR-455-5p MIMAT0036931 Ophiophagus hannah miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>chi-miR-455-5p MIMAT0036241 Capra hircus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>efu-miR-323 MIMAT0035030 Eptesicus fuscus miR-323
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 1 gcacat 6
>eca-miR-8916 MIMAT0034444 Equus caballus miR-8916
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>ppc-miR-8352-5p MIMAT0033256 Pristionchus pacificus miR-8352-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>ath-miR8173 MIMAT0032772 Arabidopsis thaliana miR8173
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>ssa-miR-8157-5p MIMAT0032736 Salmo salar miR-8157-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>ssa-miR-455-5p MIMAT0032643 Salmo salar miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>bbe-miR-2070-3p MIMAT0031637 Branchiostoma belcheri miR-2070-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>ptc-miR7838 MIMAT0030394 Populus trichocarpa miR7838
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 8 gcacat 3
>ipu-miR-455b MIMAT0029513 Ictalurus punctatus miR-455b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>ipu-miR-455a MIMAT0029512 Ictalurus punctatus miR-455a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>gga-miR-7472-5p MIMAT0029098 Gallus gallus miR-7472-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>oan-miR-7409-3p MIMAT0028965 Ornithorhynchus anatinus
miR-7409-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>mdo-miR-7308-5p MIMAT0028614 Monodelphis domestica miR-7308-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>ccr-miR-455 MIMAT0026301 Cyprinus carpio miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>prv-miR-LLT3 MIMAT0025306 Pseudorabies virus miR-LLT3
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgcaca 6
||||||
Sbjct: 1 cgcaca 6
>mse-miR-210 MIMAT0024420 Manduca sexta miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>cgr-miR-455-5p MIMAT0023964 Cricetulus griseus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>hco-miR-5352 MIMAT0023381 Haemonchus contortus miR-5352
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>ola-miR-210-3p MIMAT0022661 Oryzias latipes miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>ola-miR-455-5p MIMAT0022607 Oryzias latipes miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>cin-miR-5601-5p MIMAT0022325 Ciona intestinalis miR-5601-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>aca-miR-455-5p MIMAT0021964 Anolis carolinensis miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>asu-miR-5352-3p MIMAT0021563 Ascaris suum miR-5352-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>pma-miR-1a-5p MIMAT0019364 Petromyzon marinus miR-1a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>hsa-miR-550b-2-5p MIMAT0022737 Homo sapiens miR-550b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>tca-miR-3806-3p MIMAT0018635 Tribolium castaneum miR-3806-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>cin-let-7f-3p MIMAT0016843 Ciona intestinalis let-7f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>ppy-miR-933 MIMAT0016134 Pongo pygmaeus miR-933
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>ppy-miR-455-5p MIMAT0015899 Pongo pygmaeus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>bmo-miR-3297-5p MIMAT0015485 Bombyx mori miR-3297-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 1 gcacat 6
>tgu-miR-455-5p MIMAT0014655 Taeniopygia guttata miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>cqu-miR-210-3p MIMAT0014397 Culex quinquefasciatus miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>cqu-miR-305-3p MIMAT0014383 Culex quinquefasciatus miR-305-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>aae-miR-210 MIMAT0014293 Aedes aegypti miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>aae-miR-305-3p MIMAT0014250 Aedes aegypti miR-305-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>ssc-miR-455-5p MIMAT0022957 Sus scrofa miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>mdo-miR-455-5p MIMAT0012752 Monodelphis domestica miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>mdo-miR-210-3p MIMAT0012750 Monodelphis domestica miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>bmo-miR-2798 MIMAT0013702 Bombyx mori miR-2798
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>cel-miR-2216-5p MIMAT0011447 Caenorhabditis elegans miR-2216-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 1 gcacat 6
>dre-miR-455-2-5p MIMAT0011302 Danio rerio miR-455-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 8 gcacat 3
>sme-miR-2161-3p MIMAT0011255 Schmidtea mediterranea miR-2161-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>lmi-miR-210-3p MIMAT0010143 Locusta migratoria miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>bfl-miR-2070-3p MIMAT0019171 Branchiostoma floridae miR-2070-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>cfa-miR-210 MIMAT0009846 Canis familiaris miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>nve-miR-2024f-3p MIMAT0009769 Nematostella vectensis
miR-2024f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>nve-miR-2024e-3p MIMAT0009767 Nematostella vectensis
miR-2024e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>cte-miR-210a MIMAT0009534 Capitella teleta miR-210a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>bta-miR-323 MIMAT0009284 Bos taurus miR-323
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 1 gcacat 6
>dvi-miR-305-3p MIMAT0032066 Drosophila virilis miR-305-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>ptr-miR-933 MIMAT0008340 Pan troglodytes miR-933
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>cfa-miR-455 MIMAT0006603 Canis familiaris miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>mml-miR-933 MIMAT0006535 Macaca mulatta miR-933
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>mml-miR-455-5p MIMAT0006339 Macaca mulatta miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>gga-miR-1563 MIMAT0007422 Gallus gallus miR-1563
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 1 gcacat 6
>rno-miR-455-5p MIMAT0005316 Rattus norvegicus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>hsa-miR-933 MIMAT0004976 Homo sapiens miR-933
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 6 cgcaca 1
>ptc-miR403c-5p MIMAT0022932 Populus trichocarpa miR403c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>bta-miR-455-5p MIMAT0003835 Bos taurus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>bta-miR-210 MIMAT0003824 Bos taurus miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
>xtr-miR-455 MIMAT0003641 Xenopus tropicalis miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>mmu-miR-455-5p MIMAT0003485 Mus musculus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>gga-miR-455-5p MIMAT0003364 Gallus gallus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>hsa-miR-455-5p MIMAT0003150 Homo sapiens miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>rno-miR-1-5p MIMAT0003162 Rattus norvegicus miR-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 1 gcacat 6
>tni-miR-455 MIMAT0003029 Tetraodon nigroviridis miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>fru-miR-455 MIMAT0003028 Fugu rubripes miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>ssc-miR-323 MIMAT0002139 Sus scrofa miR-323
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 1 gcacat 6
>dre-miR-455-5p MIMAT0001879 Danio rerio miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 7 gcacat 2
>zma-miR164b-3p MIMAT0015138 Zea mays miR164b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcacat 7
||||||
Sbjct: 6 gcacat 1
>dme-miR-305-3p MIMAT0020827 Drosophila melanogaster miR-305-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcacat 7
||||||
Sbjct: 3 gcacat 8
>dme-miR-210-3p MIMAT0000355 Drosophila melanogaster miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgcaca 6
||||||
Sbjct: 8 cgcaca 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 172
Number of extensions: 170
Number of successful extensions: 78
Number of sequences better than 100.0: 78
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 78
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
