BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-7-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p 16 6.9
ata-miR164a-3p MIMAT0037213 Aegilops tauschii miR164a-3p 14 27
mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p 14 27
pma-miR-4604 MIMAT0019638 Petromyzon marinus miR-4604 14 27
cin-miR-4189-5p MIMAT0016807 Ciona intestinalis miR-4189-5p 14 27
cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p 14 27
zma-miR164f-3p MIMAT0015318 Zea mays miR164f-3p 14 27
>rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cgcacgtc 8
||||||||
Sbjct: 1 cgcacgtc 8
>ata-miR164a-3p MIMAT0037213 Aegilops tauschii miR164a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcacgt 7
|||||||
Sbjct: 8 cgcacgt 2
>mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcacgt 7
|||||||
Sbjct: 8 cgcacgt 2
>pma-miR-4604 MIMAT0019638 Petromyzon marinus miR-4604
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcacgt 7
|||||||
Sbjct: 7 cgcacgt 1
>cin-miR-4189-5p MIMAT0016807 Ciona intestinalis miR-4189-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcacgt 7
|||||||
Sbjct: 7 cgcacgt 1
>cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgcacgt 7
|||||||
Sbjct: 2 cgcacgt 8
>zma-miR164f-3p MIMAT0015318 Zea mays miR164f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcacgt 7
|||||||
Sbjct: 8 cgcacgt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 51
Number of extensions: 43
Number of successful extensions: 31
Number of sequences better than 100.0: 7
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)