BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b21rc-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B21RC-5p MIMAT0031770 Herpes B miR-B21RC-5p 14 20
cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p 14 20
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p 14 20
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271 14 20
ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p 12 80
hbv-miR-B2-3p MIMAT0031763 Herpes B miR-B2-3p 12 80
osa-miR531c MIMAT0031379 Oryza sativa miR531c 12 80
prd-miR-50-3p MIMAT0030483 Panagrellus redivivus miR-50-3p 12 80
mdo-miR-7346-3p MIMAT0028705 Monodelphis domestica miR-7346-3p 12 80
hsa-miR-6850-3p MIMAT0027601 Homo sapiens miR-6850-3p 12 80
hsa-miR-6784-5p MIMAT0027468 Homo sapiens miR-6784-5p 12 80
gga-miR-6709-5p MIMAT0025819 Gallus gallus miR-6709-5p 12 80
osa-miR5800 MIMAT0023269 Oryza sativa miR5800 12 80
hsa-miR-4707-5p MIMAT0019807 Homo sapiens miR-4707-5p 12 80
ame-miR-3779 MIMAT0018556 Apis mellifera miR-3779 12 80
aly-miR397a-3p MIMAT0017562 Arabidopsis lyrata miR397a-3p 12 80
bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d 12 80
hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195 12 80
hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24 12 80
bta-miR-2890 MIMAT0013848 Bos taurus miR-2890 12 80
mtr-miR2592a-5p MIMAT0020945 Medicago truncatula miR2592a-5p 12 80
mmu-miR-1946b MIMAT0009443 Mus musculus miR-1946b 12 80
osa-miR531b MIMAT0007763 Oryza sativa miR531b 12 80
gga-miR-1801 MIMAT0007717 Gallus gallus miR-1801 12 80
gga-miR-1561 MIMAT0007419 Gallus gallus miR-1561 12 80
hsa-miR-941 MIMAT0004984 Homo sapiens miR-941 12 80
osa-miR531a MIMAT0002887 Oryza sativa miR531a 12 80
dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p 12 80
>hbv-miR-B21RC-5p MIMAT0031770 Herpes B miR-B21RC-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgccggg 7
|||||||
Sbjct: 2 cgccggg 8
>cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgccggg 7
|||||||
Sbjct: 1 cgccggg 7
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgccggg 7
|||||||
Sbjct: 2 cgccggg 8
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgccggg 7
|||||||
Sbjct: 2 cgccggg 8
>ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgccgg 6
||||||
Sbjct: 6 cgccgg 1
>hbv-miR-B2-3p MIMAT0031763 Herpes B miR-B2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccggg 7
||||||
Sbjct: 3 gccggg 8
>osa-miR531c MIMAT0031379 Oryza sativa miR531c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgccgg 6
||||||
Sbjct: 3 cgccgg 8
>prd-miR-50-3p MIMAT0030483 Panagrellus redivivus miR-50-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgccgg 6
||||||
Sbjct: 6 cgccgg 1
>mdo-miR-7346-3p MIMAT0028705 Monodelphis domestica miR-7346-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccggg 7
||||||
Sbjct: 1 gccggg 6
>hsa-miR-6850-3p MIMAT0027601 Homo sapiens miR-6850-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccggg 7
||||||
Sbjct: 6 gccggg 1
>hsa-miR-6784-5p MIMAT0027468 Homo sapiens miR-6784-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccggg 7
||||||
Sbjct: 1 gccggg 6
>gga-miR-6709-5p MIMAT0025819 Gallus gallus miR-6709-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccggg 7
||||||
Sbjct: 8 gccggg 3
>osa-miR5800 MIMAT0023269 Oryza sativa miR5800
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccggg 7
||||||
Sbjct: 6 gccggg 1
>hsa-miR-4707-5p MIMAT0019807 Homo sapiens miR-4707-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccggg 7
||||||
Sbjct: 8 gccggg 3
>ame-miR-3779 MIMAT0018556 Apis mellifera miR-3779
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccggg 7
||||||
Sbjct: 1 gccggg 6
>aly-miR397a-3p MIMAT0017562 Arabidopsis lyrata miR397a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgccgg 6
||||||
Sbjct: 6 cgccgg 1
>bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgccgg 6
||||||
Sbjct: 6 cgccgg 1
>hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgccgg 6
||||||
Sbjct: 3 cgccgg 8
>hsv2-miR-H24 MIMAT0014707 Herpes Simplex miR-H24
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgccgg 6
||||||
Sbjct: 8 cgccgg 3
>bta-miR-2890 MIMAT0013848 Bos taurus miR-2890
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccggg 7
||||||
Sbjct: 8 gccggg 3
>mtr-miR2592a-5p MIMAT0020945 Medicago truncatula miR2592a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccggg 7
||||||
Sbjct: 6 gccggg 1
>mmu-miR-1946b MIMAT0009443 Mus musculus miR-1946b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccggg 7
||||||
Sbjct: 1 gccggg 6
>osa-miR531b MIMAT0007763 Oryza sativa miR531b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgccgg 6
||||||
Sbjct: 3 cgccgg 8
>gga-miR-1801 MIMAT0007717 Gallus gallus miR-1801
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccggg 7
||||||
Sbjct: 6 gccggg 1
>gga-miR-1561 MIMAT0007419 Gallus gallus miR-1561
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccggg 7
||||||
Sbjct: 1 gccggg 6
>hsa-miR-941 MIMAT0004984 Homo sapiens miR-941
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccggg 7
||||||
Sbjct: 8 gccggg 3
>osa-miR531a MIMAT0002887 Oryza sativa miR531a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgccgg 6
||||||
Sbjct: 3 cgccgg 8
>dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgccgg 6
||||||
Sbjct: 3 cgccgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 48
Number of extensions: 44
Number of successful extensions: 28
Number of sequences better than 100.0: 28
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 28
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
