BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hbv-miR-b21rc-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p            16   6.9  
hbv-miR-B21RC-5p MIMAT0031770 Herpes B miR-B21RC-5p                    14      27
hsa-miR-6784-5p MIMAT0027468 Homo sapiens miR-6784-5p                  14      27
bfl-miR-4872b MIMAT0020115 Branchiostoma floridae miR-4872b            14      27
hsa-miR-4707-5p MIMAT0019807 Homo sapiens miR-4707-5p                  14      27
tgu-miR-2992 MIMAT0014549 Taeniopygia guttata miR-2992                 14      27
bta-miR-2890 MIMAT0013848 Bos taurus miR-2890                          14      27
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p         14      27
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271                14      27
>cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 cgccgggg 8
         ||||||||
Sbjct: 1 cgccgggg 8
>hbv-miR-B21RC-5p MIMAT0031770 Herpes B miR-B21RC-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgccggg 7
         |||||||
Sbjct: 2 cgccggg 8
>hsa-miR-6784-5p MIMAT0027468 Homo sapiens miR-6784-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gccgggg 8
         |||||||
Sbjct: 1 gccgggg 7
>bfl-miR-4872b MIMAT0020115 Branchiostoma floridae miR-4872b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gccgggg 8
         |||||||
Sbjct: 2 gccgggg 8
>hsa-miR-4707-5p MIMAT0019807 Homo sapiens miR-4707-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gccgggg 8
         |||||||
Sbjct: 8 gccgggg 2
>tgu-miR-2992 MIMAT0014549 Taeniopygia guttata miR-2992
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gccgggg 8
         |||||||
Sbjct: 7 gccgggg 1
>bta-miR-2890 MIMAT0013848 Bos taurus miR-2890
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gccgggg 8
         |||||||
Sbjct: 8 gccgggg 2
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgccggg 7
         |||||||
Sbjct: 2 cgccggg 8
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgccggg 7
         |||||||
Sbjct: 2 cgccggg 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 79
Number of extensions: 69
Number of successful extensions: 47
Number of sequences better than 100.0: 9
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)