BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv5-miR-b8
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8 16 6.9
pxy-miR-8516 MIMAT0033753 Plutella xylostella miR-8516 14 27
pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503 14 27
mmu-miR-8109 MIMAT0031415 Mus musculus miR-8109 14 27
hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p 14 27
vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p 14 27
hsa-miR-4285 MIMAT0016913 Homo sapiens miR-4285 14 27
esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p 14 27
dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p 14 27
osa-miR2104 MIMAT0010072 Oryza sativa miR2104 14 27
mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus miR-m01-4-3p 14 27
dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p 14 27
>bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cgcggcga 8
||||||||
Sbjct: 1 cgcggcga 8
>pxy-miR-8516 MIMAT0033753 Plutella xylostella miR-8516
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggcga 8
|||||||
Sbjct: 1 gcggcga 7
>pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggcga 8
|||||||
Sbjct: 2 gcggcga 8
>mmu-miR-8109 MIMAT0031415 Mus musculus miR-8109
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcggcg 7
|||||||
Sbjct: 8 cgcggcg 2
>hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcggcg 7
|||||||
Sbjct: 7 cgcggcg 1
>vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcggcga 8
|||||||
Sbjct: 7 gcggcga 1
>hsa-miR-4285 MIMAT0016913 Homo sapiens miR-4285
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggcga 8
|||||||
Sbjct: 1 gcggcga 7
>esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggcga 8
|||||||
Sbjct: 2 gcggcga 8
>dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggcga 8
|||||||
Sbjct: 2 gcggcga 8
>osa-miR2104 MIMAT0010072 Oryza sativa miR2104
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggcga 8
|||||||
Sbjct: 1 gcggcga 7
>mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus
miR-m01-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgcggcg 7
|||||||
Sbjct: 7 cgcggcg 1
>dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggcga 8
|||||||
Sbjct: 2 gcggcga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 75
Number of extensions: 62
Number of successful extensions: 40
Number of sequences better than 100.0: 12
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
