BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b8-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bhv1-miR-B8-5p MIMAT0013970 Bovine herpesvirus miR-B8-5p               16   6.9  
mmu-miR-6538 MIMAT0025583 Mus musculus miR-6538                        14      27
hsa-miR-4767 MIMAT0019919 Homo sapiens miR-4767                        14      27
ppy-miR-1471 MIMAT0016233 Pongo pygmaeus miR-1471                      14      27
rno-miR-666-5p MIMAT0012855 Rattus norvegicus miR-666-5p               14      27
hsa-miR-1471 MIMAT0007349 Homo sapiens miR-1471                        14      27
oan-miR-1379 MIMAT0007115 Ornithorhynchus anatinus miR-1379            14      27
mmu-miR-666-5p MIMAT0003737 Mus musculus miR-666-5p                    14      27
>bhv1-miR-B8-5p MIMAT0013970 Bovine herpesvirus miR-B8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 cgcgggca 8
         ||||||||
Sbjct: 1 cgcgggca 8
>mmu-miR-6538 MIMAT0025583 Mus musculus miR-6538
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgcgggc 7
         |||||||
Sbjct: 1 cgcgggc 7
>hsa-miR-4767 MIMAT0019919 Homo sapiens miR-4767
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgcgggc 7
         |||||||
Sbjct: 1 cgcgggc 7
>ppy-miR-1471 MIMAT0016233 Pongo pygmaeus miR-1471
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgcgggc 7
         |||||||
Sbjct: 7 cgcgggc 1
>rno-miR-666-5p MIMAT0012855 Rattus norvegicus miR-666-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gcgggca 8
         |||||||
Sbjct: 2 gcgggca 8
>hsa-miR-1471 MIMAT0007349 Homo sapiens miR-1471
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgcgggc 7
         |||||||
Sbjct: 7 cgcgggc 1
>oan-miR-1379 MIMAT0007115 Ornithorhynchus anatinus miR-1379
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgcgggc 7
         |||||||
Sbjct: 1 cgcgggc 7
>mmu-miR-666-5p MIMAT0003737 Mus musculus miR-666-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gcgggca 8
         |||||||
Sbjct: 2 gcgggca 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 41
Number of successful extensions: 33
Number of sequences better than 100.0: 8
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)