BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-miR-762 MIMAT0035752 Rattus norvegicus miR-762 14 27
eca-miR-744 MIMAT0034644 Equus caballus miR-744 14 27
mmu-miR-7036b-5p MIMAT0029808 Mus musculus miR-7036b-5p 14 27
cgr-miR-744-5p MIMAT0024002 Cricetulus griseus miR-744-5p 14 27
hsa-miR-4508 MIMAT0019045 Homo sapiens miR-4508 14 27
ppy-miR-744 MIMAT0016102 Pongo pygmaeus miR-744 14 27
ssc-miR-744 MIMAT0015708 Sus scrofa miR-744 14 27
dme-miR-2496-3p MIMAT0012207 Drosophila melanogaster miR-2496-3p 14 27
bta-miR-744 MIMAT0009369 Bos taurus miR-744 14 27
ptr-miR-744 MIMAT0008317 Pan troglodytes miR-744 14 27
gga-miR-1716 MIMAT0007613 Gallus gallus miR-1716 14 27
hsa-miR-744-5p MIMAT0004945 Homo sapiens miR-744-5p 14 27
mmu-miR-744-5p MIMAT0004187 Mus musculus miR-744-5p 14 27
>rno-miR-762 MIMAT0035752 Rattus norvegicus miR-762
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 1 gcggggc 7
>eca-miR-744 MIMAT0034644 Equus caballus miR-744
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
>mmu-miR-7036b-5p MIMAT0029808 Mus musculus miR-7036b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgcgggg 7
|||||||
Sbjct: 2 cgcgggg 8
>cgr-miR-744-5p MIMAT0024002 Cricetulus griseus miR-744-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
>hsa-miR-4508 MIMAT0019045 Homo sapiens miR-4508
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 1 gcggggc 7
>ppy-miR-744 MIMAT0016102 Pongo pygmaeus miR-744
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
>ssc-miR-744 MIMAT0015708 Sus scrofa miR-744
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
>dme-miR-2496-3p MIMAT0012207 Drosophila melanogaster
miR-2496-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 1 gcggggc 7
>bta-miR-744 MIMAT0009369 Bos taurus miR-744
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
>ptr-miR-744 MIMAT0008317 Pan troglodytes miR-744
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
>gga-miR-1716 MIMAT0007613 Gallus gallus miR-1716
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
>hsa-miR-744-5p MIMAT0004945 Homo sapiens miR-744-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
>mmu-miR-744-5p MIMAT0004187 Mus musculus miR-744-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggggc 8
|||||||
Sbjct: 2 gcggggc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 115
Number of extensions: 102
Number of successful extensions: 85
Number of sequences better than 100.0: 13
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
