BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-31-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-31-5p MIMAT0016955 Rhesus lymphocryptovirus miR-rL1... 14 20
bra-miR156a-3p MIMAT0035817 Brassica rapa miR156a-3p 12 80
dvi-miR-965-3p MIMAT0035585 Drosophila virilis miR-965-3p 12 80
sly-miR156e-3p MIMAT0035454 Solanum lycopersicum miR156e-3p 12 80
atr-miR8568 MIMAT0033844 Amborella trichopoda miR8568 12 80
ppc-miR-8302-3p MIMAT0033126 Pristionchus pacificus miR-8302-3p 12 80
stu-miR156g-3p MIMAT0031350 Solanum tuberosum miR156g-3p 12 80
gga-miR-7479-5p MIMAT0029112 Gallus gallus miR-7479-5p 12 80
hsa-miR-6792-5p MIMAT0027484 Homo sapiens miR-6792-5p 12 80
hme-miR-965 MIMAT0024996 Heliconius melpomene miR-965 12 80
mse-miR-965 MIMAT0024428 Manduca sexta miR-965 12 80
hco-miR-5911a MIMAT0023367 Haemonchus contortus miR-5911a 12 80
smr-miR-965 MIMAT0018916 Strigamia maritima miR-965 12 80
ame-miR-965-3p MIMAT0022969 Apis mellifera miR-965-3p 12 80
aly-miR156g-3p MIMAT0017410 Arabidopsis lyrata miR156g-3p 12 80
aly-miR156e-3p MIMAT0017406 Arabidopsis lyrata miR156e-3p 12 80
api-miR-965 MIMAT0014744 Acyrthosiphon pisum miR-965 12 80
cqu-miR-965 MIMAT0014372 Culex quinquefasciatus miR-965 12 80
aae-miR-965 MIMAT0014268 Aedes aegypti miR-965 12 80
dpu-miR-965 MIMAT0012674 Daphnia pulex miR-965 12 80
dsi-miR-965-3p MIMAT0012472 Drosophila simulans miR-965-3p 12 80
dps-miR-2572-5p MIMAT0012414 Drosophila pseudoobscura miR-2572-5p 12 80
dps-miR-965-3p MIMAT0012250 Drosophila pseudoobscura miR-965-3p 12 80
dme-miR-2497-5p MIMAT0012208 Drosophila melanogaster miR-2497-5p 12 80
bmo-miR-965-3p MIMAT0010126 Bombyx mori miR-965-3p 12 80
aga-miR-965 MIMAT0010108 Anopheles gambiae miR-965 12 80
tca-miR-965-3p MIMAT0010095 Tribolium castaneum miR-965-3p 12 80
dme-miR-965-3p MIMAT0005480 Drosophila melanogaster miR-965-3p 12 80
mmu-miR-654-5p MIMAT0004897 Mus musculus miR-654-5p 12 80
>rlcv-miR-rL1-31-5p MIMAT0016955 Rhesus lymphocryptovirus
miR-rL1-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgcttac 7
|||||||
Sbjct: 2 cgcttac 8
>bra-miR156a-3p MIMAT0035817 Brassica rapa miR156a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcttac 7
||||||
Sbjct: 1 gcttac 6
>dvi-miR-965-3p MIMAT0035585 Drosophila virilis miR-965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>sly-miR156e-3p MIMAT0035454 Solanum lycopersicum miR156e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcttac 7
||||||
Sbjct: 1 gcttac 6
>atr-miR8568 MIMAT0033844 Amborella trichopoda miR8568
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcttac 7
||||||
Sbjct: 3 gcttac 8
>ppc-miR-8302-3p MIMAT0033126 Pristionchus pacificus miR-8302-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>stu-miR156g-3p MIMAT0031350 Solanum tuberosum miR156g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcttac 7
||||||
Sbjct: 1 gcttac 6
>gga-miR-7479-5p MIMAT0029112 Gallus gallus miR-7479-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcttac 7
||||||
Sbjct: 8 gcttac 3
>hsa-miR-6792-5p MIMAT0027484 Homo sapiens miR-6792-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcttac 7
||||||
Sbjct: 6 gcttac 1
>hme-miR-965 MIMAT0024996 Heliconius melpomene miR-965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>mse-miR-965 MIMAT0024428 Manduca sexta miR-965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>hco-miR-5911a MIMAT0023367 Haemonchus contortus miR-5911a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>smr-miR-965 MIMAT0018916 Strigamia maritima miR-965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>ame-miR-965-3p MIMAT0022969 Apis mellifera miR-965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>aly-miR156g-3p MIMAT0017410 Arabidopsis lyrata miR156g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcttac 7
||||||
Sbjct: 1 gcttac 6
>aly-miR156e-3p MIMAT0017406 Arabidopsis lyrata miR156e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcttac 7
||||||
Sbjct: 1 gcttac 6
>api-miR-965 MIMAT0014744 Acyrthosiphon pisum miR-965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>cqu-miR-965 MIMAT0014372 Culex quinquefasciatus miR-965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>aae-miR-965 MIMAT0014268 Aedes aegypti miR-965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>dpu-miR-965 MIMAT0012674 Daphnia pulex miR-965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>dsi-miR-965-3p MIMAT0012472 Drosophila simulans miR-965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>dps-miR-2572-5p MIMAT0012414 Drosophila pseudoobscura
miR-2572-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcttac 7
||||||
Sbjct: 6 gcttac 1
>dps-miR-965-3p MIMAT0012250 Drosophila pseudoobscura miR-965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>dme-miR-2497-5p MIMAT0012208 Drosophila melanogaster
miR-2497-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcttac 7
||||||
Sbjct: 6 gcttac 1
>bmo-miR-965-3p MIMAT0010126 Bombyx mori miR-965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>aga-miR-965 MIMAT0010108 Anopheles gambiae miR-965
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>tca-miR-965-3p MIMAT0010095 Tribolium castaneum miR-965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>dme-miR-965-3p MIMAT0005480 Drosophila melanogaster miR-965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgctta 6
||||||
Sbjct: 6 cgctta 1
>mmu-miR-654-5p MIMAT0004897 Mus musculus miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcttac 7
||||||
Sbjct: 8 gcttac 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 31
Number of extensions: 30
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
