BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-5
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hco-miR-5951 MIMAT0023453 Haemonchus contortus miR-5951                14      20
osa-miR5810 MIMAT0023282 Oryza sativa miR5810                          14      20
mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279                   14      20
tca-miR-3895-3p MIMAT0018893 Tribolium castaneum miR-3895-3p           14      20
rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5                     14      20
oha-miR-23b-5p MIMAT0036856 Ophiophagus hannah miR-23b-5p              12      80
oha-miR-23a-5p MIMAT0036854 Ophiophagus hannah miR-23a-5p              12      80
chi-miR-23b-5p MIMAT0036088 Capra hircus miR-23b-5p                    12      80
esi-miR8622c MIMAT0033963 Ectocarpus siliculosus miR8622c              12      80
sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p           12      80
ssa-miR-23a-4-5p MIMAT0032550 Salmo salar miR-23a-4-5p                 12      80
ssa-miR-196b-3p MIMAT0032459 Salmo salar miR-196b-3p                   12      80
hvu-miR6178 MIMAT0024801 Hordeum vulgare miR6178                       12      80
cgr-miR-23a-5p MIMAT0023862 Cricetulus griseus miR-23a-5p              12      80
hsa-miR-6070 MIMAT0023695 Homo sapiens miR-6070                        12      80
aca-miR-23a-5p MIMAT0021895 Anolis carolinensis miR-23a-5p             12      80
hsa-miR-642b-5p MIMAT0022736 Homo sapiens miR-642b-5p                  12      80
hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914                        12      80
ame-miR-3788 MIMAT0018567 Apis mellifera miR-3788                      12      80
pab-miR3710 MIMAT0018143 Picea abies miR3710                           12      80
cin-miR-4018a-5p MIMAT0016528 Ciona intestinalis miR-4018a-5p          12      80
cin-miR-4001c-5p MIMAT0016450 Ciona intestinalis miR-4001c-5p          12      80
tgu-miR-23-5p MIMAT0014644 Taeniopygia guttata miR-23-5p               12      80
mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p              12      80
gga-miR-1588 MIMAT0007450 Gallus gallus miR-1588                       12      80
osa-miR1427 MIMAT0005961 Oryza sativa miR1427                          12      80
oan-miR-23a-5p MIMAT0007060 Ornithorhynchus anatinus miR-23a-5p        12      80
oan-miR-23b-5p MIMAT0006958 Ornithorhynchus anatinus miR-23b-5p        12      80
smo-miR1095b MIMAT0005251 Selaginella moellendorffii miR1095b          12      80
smo-miR1095a MIMAT0005250 Selaginella moellendorffii miR1095a          12      80
mdo-miR-23a-5p MIMAT0026710 Monodelphis domestica miR-23a-5p           12      80
mml-miR-23a-5p MIMAT0026599 Macaca mulatta miR-23a-5p                  12      80
rno-miR-23a-5p MIMAT0004712 Rattus norvegicus miR-23a-5p               12      80
mmu-miR-23a-5p MIMAT0017019 Mus musculus miR-23a-5p                    12      80
hsa-miR-23b-5p MIMAT0004587 Homo sapiens miR-23b-5p                    12      80
hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p                12      80
hsa-miR-23a-5p MIMAT0004496 Homo sapiens miR-23a-5p                    12      80
>hco-miR-5951 MIMAT0023453 Haemonchus contortus miR-5951
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cggaacc 7
         |||||||
Sbjct: 7 cggaacc 1
>osa-miR5810 MIMAT0023282 Oryza sativa miR5810
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggaacc 7
         |||||||
Sbjct: 2 cggaacc 8
>mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggaacc 7
         |||||||
Sbjct: 1 cggaacc 7
>tca-miR-3895-3p MIMAT0018893 Tribolium castaneum miR-3895-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggaacc 7
         |||||||
Sbjct: 1 cggaacc 7
>rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggaacc 7
         |||||||
Sbjct: 2 cggaacc 8
>oha-miR-23b-5p MIMAT0036856 Ophiophagus hannah miR-23b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>oha-miR-23a-5p MIMAT0036854 Ophiophagus hannah miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>chi-miR-23b-5p MIMAT0036088 Capra hircus miR-23b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>esi-miR8622c MIMAT0033963 Ectocarpus siliculosus miR8622c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cggaac 6
         ||||||
Sbjct: 3 cggaac 8
>ssa-miR-23a-4-5p MIMAT0032550 Salmo salar miR-23a-4-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>ssa-miR-196b-3p MIMAT0032459 Salmo salar miR-196b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 3 ggaacc 8
>hvu-miR6178 MIMAT0024801 Hordeum vulgare miR6178
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cggaac 6
         ||||||
Sbjct: 3 cggaac 8
>cgr-miR-23a-5p MIMAT0023862 Cricetulus griseus miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>hsa-miR-6070 MIMAT0023695 Homo sapiens miR-6070
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>aca-miR-23a-5p MIMAT0021895 Anolis carolinensis miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>hsa-miR-642b-5p MIMAT0022736 Homo sapiens miR-642b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 6 ggaacc 1
>hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 3 ggaacc 8
>ame-miR-3788 MIMAT0018567 Apis mellifera miR-3788
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cggaac 6
         ||||||
Sbjct: 6 cggaac 1
>pab-miR3710 MIMAT0018143 Picea abies miR3710
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 3 ggaacc 8
>cin-miR-4018a-5p MIMAT0016528 Ciona intestinalis miR-4018a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cggaac 6
         ||||||
Sbjct: 1 cggaac 6
>cin-miR-4001c-5p MIMAT0016450 Ciona intestinalis miR-4001c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cggaac 6
         ||||||
Sbjct: 1 cggaac 6
>tgu-miR-23-5p MIMAT0014644 Taeniopygia guttata miR-23-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>gga-miR-1588 MIMAT0007450 Gallus gallus miR-1588
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 3 ggaacc 8
>osa-miR1427 MIMAT0005961 Oryza sativa miR1427
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 cggaac 6
         ||||||
Sbjct: 3 cggaac 8
>oan-miR-23a-5p MIMAT0007060 Ornithorhynchus anatinus miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>oan-miR-23b-5p MIMAT0006958 Ornithorhynchus anatinus miR-23b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>smo-miR1095b MIMAT0005251 Selaginella moellendorffii miR1095b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>smo-miR1095a MIMAT0005250 Selaginella moellendorffii miR1095a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>mdo-miR-23a-5p MIMAT0026710 Monodelphis domestica miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 6 ggaacc 1
>mml-miR-23a-5p MIMAT0026599 Macaca mulatta miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 6 ggaacc 1
>rno-miR-23a-5p MIMAT0004712 Rattus norvegicus miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>mmu-miR-23a-5p MIMAT0017019 Mus musculus miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>hsa-miR-23b-5p MIMAT0004587 Homo sapiens miR-23b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
>hsa-miR-23a-5p MIMAT0004496 Homo sapiens miR-23a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggaacc 7
         ||||||
Sbjct: 8 ggaacc 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 57
Number of extensions: 52
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)