BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mtr-miR5224b MIMAT0021185 Medicago truncatula miR5224b 14 20
gma-miR4361 MIMAT0018256 Glycine max miR4361 14 20
sme-miR-2147a MIMAT0011230 Schmidtea mediterranea miR-2147a 14 20
gma-miR1526 MIMAT0007388 Glycine max miR1526 14 20
ame-miR-9890 MIMAT0037295 Apis mellifera miR-9890 12 80
ssc-miR-9813-5p MIMAT0037031 Sus scrofa miR-9813-5p 12 80
efu-miR-7a MIMAT0035157 Eptesicus fuscus miR-7a 12 80
efu-miR-9234c MIMAT0034852 Eptesicus fuscus miR-9234c 12 80
eca-miR-9082 MIMAT0034627 Equus caballus miR-9082 12 80
eca-miR-9020 MIMAT0034561 Equus caballus miR-9020 12 80
cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808 12 80
sma-miR-8420-3p MIMAT0033545 Schistosoma mansoni miR-8420-3p 12 80
ppc-miR-8350-3p MIMAT0033253 Pristionchus pacificus miR-8350-3p 12 80
bdi-miR5049-5p MIMAT0030162 Brachypodium distachyon miR5049-5p 12 80
mmu-miR-7685-5p MIMAT0029896 Mus musculus miR-7685-5p 12 80
lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b 12 80
lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a 12 80
mes-miR482 MIMAT0029297 Manihot esculenta miR482 12 80
mdo-miR-7351-3p MIMAT0028715 Monodelphis domestica miR-7351-3p 12 80
mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p 12 80
mmu-miR-6769b-3p MIMAT0028041 Mus musculus miR-6769b-3p 12 80
mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p 12 80
hsa-miR-6875-3p MIMAT0027651 Homo sapiens miR-6875-3p 12 80
pde-miR482b MIMAT0025334 Pinus densata miR482b 12 80
cgr-miR-1903 MIMAT0023820 Cricetulus griseus miR-1903 12 80
nta-miR6021 MIMAT0023588 Nicotiana tabacum miR6021 12 80
vun-miR482 MIMAT0022766 Vigna unguiculata miR482 12 80
mmu-miR-5625-5p MIMAT0022379 Mus musculus miR-5625-5p 12 80
gma-miR482d-3p MIMAT0021672 Glycine max miR482d-3p 12 80
dme-miR-4947-5p MIMAT0020157 Drosophila melanogaster miR-4947-5p 12 80
hsa-miR-4664-3p MIMAT0019738 Homo sapiens miR-4664-3p 12 80
csi-miR482a-3p MIMAT0018480 Citrus sinensis miR482a-3p 12 80
gma-miR482b-3p MIMAT0020952 Glycine max miR482b-3p 12 80
mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus miR-M1-13-5p 12 80
pab-miR482b MIMAT0018157 Picea abies miR482b 12 80
pab-miR482a MIMAT0018156 Picea abies miR482a 12 80
gso-miR482b MIMAT0016354 Glycine soja miR482b 12 80
gso-miR482a MIMAT0016353 Glycine soja miR482a 12 80
ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236 12 80
esi-miR3454b-3p MIMAT0017760 Ectocarpus siliculosus miR3454b-3p 12 80
esi-miR3454f-3p MIMAT0017754 Ectocarpus siliculosus miR3454f-3p 12 80
aly-miR3446-5p MIMAT0017727 Arabidopsis lyrata miR3446-5p 12 80
zma-miR482-3p MIMAT0014027 Zea mays miR482-3p 12 80
ptr-miR-718 MIMAT0012821 Pan troglodytes miR-718 12 80
hsa-miR-718 MIMAT0012735 Homo sapiens miR-718 12 80
mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b 12 80
mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a 12 80
bta-miR-2331-5p MIMAT0011863 Bos taurus miR-2331-5p 12 80
pvu-miR482-3p MIMAT0011173 Phaseolus vulgaris miR482-3p 12 80
cfa-miR-718 MIMAT0009939 Canis familiaris miR-718 12 80
aqu-miR-2020-3p MIMAT0009699 Amphimedon queenslandica miR-2020-3p 12 80
ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236 12 80
gma-miR482a-3p MIMAT0007364 Glycine max miR482a-3p 12 80
pta-miR482c MIMAT0006014 Pinus taeda miR482c 12 80
hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p 12 80
tae-miR1127a MIMAT0005362 Triticum aestivum miR1127a 12 80
dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p 12 80
pta-miR482b MIMAT0005003 Pinus taeda miR482b 12 80
pta-miR482a MIMAT0005002 Pinus taeda miR482a 12 80
mmu-miR-718 MIMAT0003514 Mus musculus miR-718 12 80
mml-miR-141-5p MIMAT0026561 Macaca mulatta miR-141-5p 12 80
kshv-miR-K12-2-3p MIMAT0015215 Kaposi sarcoma-associated miR-K12... 12 80
hsa-miR-141-5p MIMAT0004598 Homo sapiens miR-141-5p 12 80
mmu-miR-141-5p MIMAT0004533 Mus musculus miR-141-5p 12 80
>mtr-miR5224b MIMAT0021185 Medicago truncatula miR5224b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggaaga 7
|||||||
Sbjct: 1 cggaaga 7
>gma-miR4361 MIMAT0018256 Glycine max miR4361
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggaaga 7
|||||||
Sbjct: 2 cggaaga 8
>sme-miR-2147a MIMAT0011230 Schmidtea mediterranea miR-2147a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggaaga 7
|||||||
Sbjct: 1 cggaaga 7
>gma-miR1526 MIMAT0007388 Glycine max miR1526
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggaaga 7
|||||||
Sbjct: 2 cggaaga 8
>ame-miR-9890 MIMAT0037295 Apis mellifera miR-9890
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggaag 6
||||||
Sbjct: 3 cggaag 8
>ssc-miR-9813-5p MIMAT0037031 Sus scrofa miR-9813-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggaag 6
||||||
Sbjct: 1 cggaag 6
>efu-miR-7a MIMAT0035157 Eptesicus fuscus miR-7a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>efu-miR-9234c MIMAT0034852 Eptesicus fuscus miR-9234c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 7 ggaaga 2
>eca-miR-9082 MIMAT0034627 Equus caballus miR-9082
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 7 ggaaga 2
>eca-miR-9020 MIMAT0034561 Equus caballus miR-9020
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>sma-miR-8420-3p MIMAT0033545 Schistosoma mansoni miR-8420-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>ppc-miR-8350-3p MIMAT0033253 Pristionchus pacificus miR-8350-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 8 cggaag 3
>bdi-miR5049-5p MIMAT0030162 Brachypodium distachyon miR5049-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 8 cggaag 3
>mmu-miR-7685-5p MIMAT0029896 Mus musculus miR-7685-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 8 cggaag 3
>lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>mes-miR482 MIMAT0029297 Manihot esculenta miR482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>mdo-miR-7351-3p MIMAT0028715 Monodelphis domestica miR-7351-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 1 ggaaga 6
>mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>mmu-miR-6769b-3p MIMAT0028041 Mus musculus miR-6769b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>hsa-miR-6875-3p MIMAT0027651 Homo sapiens miR-6875-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>pde-miR482b MIMAT0025334 Pinus densata miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>cgr-miR-1903 MIMAT0023820 Cricetulus griseus miR-1903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>nta-miR6021 MIMAT0023588 Nicotiana tabacum miR6021
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>vun-miR482 MIMAT0022766 Vigna unguiculata miR482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>mmu-miR-5625-5p MIMAT0022379 Mus musculus miR-5625-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggaag 6
||||||
Sbjct: 3 cggaag 8
>gma-miR482d-3p MIMAT0021672 Glycine max miR482d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>dme-miR-4947-5p MIMAT0020157 Drosophila melanogaster
miR-4947-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 6 cggaag 1
>hsa-miR-4664-3p MIMAT0019738 Homo sapiens miR-4664-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 6 cggaag 1
>csi-miR482a-3p MIMAT0018480 Citrus sinensis miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>gma-miR482b-3p MIMAT0020952 Glycine max miR482b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus
miR-M1-13-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>pab-miR482b MIMAT0018157 Picea abies miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>pab-miR482a MIMAT0018156 Picea abies miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>gso-miR482b MIMAT0016354 Glycine soja miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>gso-miR482a MIMAT0016353 Glycine soja miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>esi-miR3454b-3p MIMAT0017760 Ectocarpus siliculosus miR3454b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 6 cggaag 1
>esi-miR3454f-3p MIMAT0017754 Ectocarpus siliculosus miR3454f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 6 cggaag 1
>aly-miR3446-5p MIMAT0017727 Arabidopsis lyrata miR3446-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggaag 6
||||||
Sbjct: 3 cggaag 8
>zma-miR482-3p MIMAT0014027 Zea mays miR482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>ptr-miR-718 MIMAT0012821 Pan troglodytes miR-718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 6 cggaag 1
>hsa-miR-718 MIMAT0012735 Homo sapiens miR-718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 6 cggaag 1
>mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>bta-miR-2331-5p MIMAT0011863 Bos taurus miR-2331-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 8 cggaag 3
>pvu-miR482-3p MIMAT0011173 Phaseolus vulgaris miR482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>cfa-miR-718 MIMAT0009939 Canis familiaris miR-718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 6 cggaag 1
>aqu-miR-2020-3p MIMAT0009699 Amphimedon queenslandica
miR-2020-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggaag 6
||||||
Sbjct: 1 cggaag 6
>ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>gma-miR482a-3p MIMAT0007364 Glycine max miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>pta-miR482c MIMAT0006014 Pinus taeda miR482c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>tae-miR1127a MIMAT0005362 Triticum aestivum miR1127a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 8 cggaag 3
>dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 7 ggaaga 2
>pta-miR482b MIMAT0005003 Pinus taeda miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>pta-miR482a MIMAT0005002 Pinus taeda miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>mmu-miR-718 MIMAT0003514 Mus musculus miR-718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggaag 6
||||||
Sbjct: 6 cggaag 1
>mml-miR-141-5p MIMAT0026561 Macaca mulatta miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>kshv-miR-K12-2-3p MIMAT0015215 Kaposi sarcoma-associated
miR-K12-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>hsa-miR-141-5p MIMAT0004598 Homo sapiens miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>mmu-miR-141-5p MIMAT0004533 Mus musculus miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 174
Number of extensions: 170
Number of successful extensions: 64
Number of sequences better than 100.0: 64
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 64
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
