BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7659-5p MIMAT0029824 Mus musculus miR-7659-5p 14 20
dps-miR-2573-5p MIMAT0012416 Drosophila pseudoobscura miR-2573-5p 14 20
ata-miR171c-3p MIMAT0037101 Aegilops tauschii miR171c-3p 12 80
sly-miR171e MIMAT0035482 Solanum lycopersicum miR171e 12 80
efu-miR-9290 MIMAT0034948 Eptesicus fuscus miR-9290 12 80
atr-miR171b MIMAT0033925 Amborella trichopoda miR171b 12 80
str-miR-8369-5p MIMAT0033348 Strongyloides ratti miR-8369-5p 12 80
ppc-miR-8294-5p MIMAT0033101 Pristionchus pacificus miR-8294-5p 12 80
ppc-miR-8249-5p MIMAT0032962 Pristionchus pacificus miR-8249-5p 12 80
hbv-miR-B3RC-3p MIMAT0031765 Herpes B miR-B3RC-3p 12 80
stu-miR171d-3p MIMAT0031302 Solanum tuberosum miR171d-3p 12 80
stu-miR171b-3p MIMAT0031248 Solanum tuberosum miR171b-3p 12 80
prd-miR-7896-5p MIMAT0030582 Panagrellus redivivus miR-7896-5p 12 80
mmu-miR-7662-3p MIMAT0029831 Mus musculus miR-7662-3p 12 80
lja-miR171d-5p MIMAT0029318 Lotus japonicus miR171d-5p 12 80
mes-miR171d MIMAT0029240 Manihot esculenta miR171d 12 80
mes-miR171c MIMAT0029239 Manihot esculenta miR171c 12 80
mes-miR171b MIMAT0029238 Manihot esculenta miR171b 12 80
cme-miR171b MIMAT0026123 Cucumis melo miR171b 12 80
cme-miR171d MIMAT0026122 Cucumis melo miR171d 12 80
cme-miR171i MIMAT0026085 Cucumis melo miR171i 12 80
mdm-miR171n MIMAT0025951 Malus domestica miR171n 12 80
mdm-miR171m MIMAT0025950 Malus domestica miR171m 12 80
mdm-miR171l MIMAT0025949 Malus domestica miR171l 12 80
mdm-miR171k MIMAT0025948 Malus domestica miR171k 12 80
mdm-miR171j MIMAT0025947 Malus domestica miR171j 12 80
mdm-miR171f MIMAT0025943 Malus domestica miR171f 12 80
mdm-miR171b MIMAT0025939 Malus domestica miR171b 12 80
mdm-miR171a MIMAT0025938 Malus domestica miR171a 12 80
hsa-miR-6827-5p MIMAT0027554 Homo sapiens miR-6827-5p 12 80
ptc-miR6432 MIMAT0025233 Populus trichocarpa miR6432 12 80
ppe-miR171b MIMAT0027309 Prunus persica miR171b 12 80
ppe-miR171h MIMAT0027285 Prunus persica miR171h 12 80
nta-miR171b MIMAT0024687 Nicotiana tabacum miR171b 12 80
lus-miR171i MIMAT0027224 Linum usitatissimum miR171i 12 80
lus-miR171h MIMAT0027219 Linum usitatissimum miR171h 12 80
ggo-miR-760 MIMAT0024132 Gorilla gorilla miR-760 12 80
gma-miR171t MIMAT0023236 Glycine max miR171t 12 80
gma-miR171q MIMAT0023215 Glycine max miR171q 12 80
gma-miR171p MIMAT0023208 Glycine max miR171p 12 80
gma-miR171o-3p MIMAT0023204 Glycine max miR171o-3p 12 80
gma-miR171n MIMAT0023202 Glycine max miR171n 12 80
gma-miR171m MIMAT0023200 Glycine max miR171m 12 80
ssl-miR171b MIMAT0022513 Salvia sclarea miR171b 12 80
ssl-miR171a MIMAT0022512 Salvia sclarea miR171a 12 80
gma-miR5037d MIMAT0022455 Glycine max miR5037d 12 80
gma-miR171k-3p MIMAT0022995 Glycine max miR171k-3p 12 80
gma-miR171i-3p MIMAT0021057 Glycine max miR171i-3p 12 80
hsa-miR-4448 MIMAT0018967 Homo sapiens miR-4448 12 80
csi-miR171a MIMAT0018456 Citrus sinensis miR171a 12 80
gma-miR171c-3p MIMAT0022972 Glycine max miR171c-3p 12 80
tae-miR171b MIMAT0018227 Triticum aestivum miR171b 12 80
hsa-miR-4268 MIMAT0016896 Homo sapiens miR-4268 12 80
ppy-miR-760 MIMAT0016104 Pongo pygmaeus miR-760 12 80
ppy-miR-647 MIMAT0016081 Pongo pygmaeus miR-647 12 80
aly-miR845a-3p MIMAT0017632 Arabidopsis lyrata miR845a-3p 12 80
aly-miR171c-3p MIMAT0017520 Arabidopsis lyrata miR171c-3p 12 80
aly-miR171b-3p MIMAT0017518 Arabidopsis lyrata miR171b-3p 12 80
rco-miR171b MIMAT0014173 Ricinus communis miR171b 12 80
rco-miR171a MIMAT0014172 Ricinus communis miR171a 12 80
ctr-miR171 MIMAT0014082 Citrus trifoliata miR171 12 80
mml-miR-760 MIMAT0012788 Macaca mulatta miR-760 12 80
bmo-miR-745-5p MIMAT0013625 Bombyx mori miR-745-5p 12 80
bmo-miR-306a-3p MIMAT0015303 Bombyx mori miR-306a-3p 12 80
bol-miR171a MIMAT0010170 Brassica oleracea miR171a 12 80
bra-miR171d MIMAT0010164 Brassica rapa miR171d 12 80
bra-miR171c MIMAT0010163 Brassica rapa miR171c 12 80
bra-miR171b MIMAT0010162 Brassica rapa miR171b 12 80
bra-miR171a MIMAT0010161 Brassica rapa miR171a 12 80
bta-miR-760-3p MIMAT0022951 Bos taurus miR-760-3p 12 80
ptr-miR-760 MIMAT0008319 Pan troglodytes miR-760 12 80
sly-miR171d MIMAT0007925 Solanum lycopersicum miR171d 12 80
sly-miR171b MIMAT0007923 Solanum lycopersicum miR171b 12 80
vvi-miR171g MIMAT0006555 Vitis vinifera miR171g 12 80
mml-miR-505-5p MIMAT0026892 Macaca mulatta miR-505-5p 12 80
gga-miR-1712-5p MIMAT0007607 Gallus gallus miR-1712-5p 12 80
gga-miR-1648-5p MIMAT0007524 Gallus gallus miR-1648-5p 12 80
mdo-miR-1548-5p MIMAT0026772 Monodelphis domestica miR-1548-5p 12 80
vvi-miR171f MIMAT0005696 Vitis vinifera miR171f 12 80
bna-miR171e MIMAT0005609 Brassica napus miR171e 12 80
bna-miR171d MIMAT0005608 Brassica napus miR171d 12 80
bna-miR171c MIMAT0005607 Brassica napus miR171c 12 80
bna-miR171b MIMAT0005606 Brassica napus miR171b 12 80
bna-miR171a MIMAT0005605 Brassica napus miR171a 12 80
rno-miR-760-3p MIMAT0005337 Rattus norvegicus miR-760-3p 12 80
smo-miR171a MIMAT0005223 Selaginella moellendorffii miR171a 12 80
ppt-miR171b MIMAT0004376 Physcomitrella patens miR171b 12 80
mtr-miR171f MIMAT0011113 Medicago truncatula miR171f 12 80
hsa-miR-760 MIMAT0004957 Homo sapiens miR-760 12 80
ath-miR845a MIMAT0004268 Arabidopsis thaliana miR845a 12 80
mmu-miR-760-3p MIMAT0003898 Mus musculus miR-760-3p 12 80
ptc-miR171b MIMAT0001984 Populus trichocarpa miR171b 12 80
ptc-miR171a-3p MIMAT0001983 Populus trichocarpa miR171a-3p 12 80
sbi-miR171f MIMAT0001756 Sorghum bicolor miR171f 12 80
zma-miR171h-3p MIMAT0001746 Zea mays miR171h-3p 12 80
zma-miR171k-3p MIMAT0001745 Zea mays miR171k-3p 12 80
zma-miR171f-3p MIMAT0001695 Zea mays miR171f-3p 12 80
sbi-miR171e MIMAT0001466 Sorghum bicolor miR171e 12 80
zma-miR171b-3p MIMAT0001386 Zea mays miR171b-3p 12 80
osa-miR171h MIMAT0001077 Oryza sativa miR171h 12 80
ath-miR171c-3p MIMAT0000921 Arabidopsis thaliana miR171c-3p 12 80
ath-miR171b-3p MIMAT0000920 Arabidopsis thaliana miR171b-3p 12 80
>mmu-miR-7659-5p MIMAT0029824 Mus musculus miR-7659-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cggctcc 7
|||||||
Sbjct: 8 cggctcc 2
>dps-miR-2573-5p MIMAT0012416 Drosophila pseudoobscura
miR-2573-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cggctcc 7
|||||||
Sbjct: 8 cggctcc 2
>ata-miR171c-3p MIMAT0037101 Aegilops tauschii miR171c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>sly-miR171e MIMAT0035482 Solanum lycopersicum miR171e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>efu-miR-9290 MIMAT0034948 Eptesicus fuscus miR-9290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggctcc 7
||||||
Sbjct: 1 ggctcc 6
>atr-miR171b MIMAT0033925 Amborella trichopoda miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>str-miR-8369-5p MIMAT0033348 Strongyloides ratti miR-8369-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggctcc 7
||||||
Sbjct: 8 ggctcc 3
>ppc-miR-8294-5p MIMAT0033101 Pristionchus pacificus miR-8294-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 3 cggctc 8
>ppc-miR-8249-5p MIMAT0032962 Pristionchus pacificus miR-8249-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 3 cggctc 8
>hbv-miR-B3RC-3p MIMAT0031765 Herpes B miR-B3RC-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>stu-miR171d-3p MIMAT0031302 Solanum tuberosum miR171d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>stu-miR171b-3p MIMAT0031248 Solanum tuberosum miR171b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>prd-miR-7896-5p MIMAT0030582 Panagrellus redivivus miR-7896-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mmu-miR-7662-3p MIMAT0029831 Mus musculus miR-7662-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggctcc 7
||||||
Sbjct: 7 ggctcc 2
>lja-miR171d-5p MIMAT0029318 Lotus japonicus miR171d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mes-miR171d MIMAT0029240 Manihot esculenta miR171d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mes-miR171c MIMAT0029239 Manihot esculenta miR171c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mes-miR171b MIMAT0029238 Manihot esculenta miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>cme-miR171b MIMAT0026123 Cucumis melo miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>cme-miR171d MIMAT0026122 Cucumis melo miR171d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>cme-miR171i MIMAT0026085 Cucumis melo miR171i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mdm-miR171n MIMAT0025951 Malus domestica miR171n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mdm-miR171m MIMAT0025950 Malus domestica miR171m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mdm-miR171l MIMAT0025949 Malus domestica miR171l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mdm-miR171k MIMAT0025948 Malus domestica miR171k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mdm-miR171j MIMAT0025947 Malus domestica miR171j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mdm-miR171f MIMAT0025943 Malus domestica miR171f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mdm-miR171b MIMAT0025939 Malus domestica miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mdm-miR171a MIMAT0025938 Malus domestica miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>hsa-miR-6827-5p MIMAT0027554 Homo sapiens miR-6827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggctcc 7
||||||
Sbjct: 8 ggctcc 3
>ptc-miR6432 MIMAT0025233 Populus trichocarpa miR6432
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>ppe-miR171b MIMAT0027309 Prunus persica miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ppe-miR171h MIMAT0027285 Prunus persica miR171h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>nta-miR171b MIMAT0024687 Nicotiana tabacum miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>lus-miR171i MIMAT0027224 Linum usitatissimum miR171i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>lus-miR171h MIMAT0027219 Linum usitatissimum miR171h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ggo-miR-760 MIMAT0024132 Gorilla gorilla miR-760
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>gma-miR171t MIMAT0023236 Glycine max miR171t
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>gma-miR171q MIMAT0023215 Glycine max miR171q
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>gma-miR171p MIMAT0023208 Glycine max miR171p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>gma-miR171o-3p MIMAT0023204 Glycine max miR171o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>gma-miR171n MIMAT0023202 Glycine max miR171n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>gma-miR171m MIMAT0023200 Glycine max miR171m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ssl-miR171b MIMAT0022513 Salvia sclarea miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ssl-miR171a MIMAT0022512 Salvia sclarea miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>gma-miR5037d MIMAT0022455 Glycine max miR5037d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggctcc 7
||||||
Sbjct: 8 ggctcc 3
>gma-miR171k-3p MIMAT0022995 Glycine max miR171k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>gma-miR171i-3p MIMAT0021057 Glycine max miR171i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>hsa-miR-4448 MIMAT0018967 Homo sapiens miR-4448
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggctcc 7
||||||
Sbjct: 1 ggctcc 6
>csi-miR171a MIMAT0018456 Citrus sinensis miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>gma-miR171c-3p MIMAT0022972 Glycine max miR171c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>tae-miR171b MIMAT0018227 Triticum aestivum miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>hsa-miR-4268 MIMAT0016896 Homo sapiens miR-4268
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggctcc 7
||||||
Sbjct: 1 ggctcc 6
>ppy-miR-760 MIMAT0016104 Pongo pygmaeus miR-760
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>ppy-miR-647 MIMAT0016081 Pongo pygmaeus miR-647
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggctcc 7
||||||
Sbjct: 3 ggctcc 8
>aly-miR845a-3p MIMAT0017632 Arabidopsis lyrata miR845a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>aly-miR171c-3p MIMAT0017520 Arabidopsis lyrata miR171c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>aly-miR171b-3p MIMAT0017518 Arabidopsis lyrata miR171b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>rco-miR171b MIMAT0014173 Ricinus communis miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>rco-miR171a MIMAT0014172 Ricinus communis miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ctr-miR171 MIMAT0014082 Citrus trifoliata miR171
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mml-miR-760 MIMAT0012788 Macaca mulatta miR-760
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>bmo-miR-745-5p MIMAT0013625 Bombyx mori miR-745-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>bmo-miR-306a-3p MIMAT0015303 Bombyx mori miR-306a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bol-miR171a MIMAT0010170 Brassica oleracea miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bra-miR171d MIMAT0010164 Brassica rapa miR171d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bra-miR171c MIMAT0010163 Brassica rapa miR171c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bra-miR171b MIMAT0010162 Brassica rapa miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bra-miR171a MIMAT0010161 Brassica rapa miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bta-miR-760-3p MIMAT0022951 Bos taurus miR-760-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>ptr-miR-760 MIMAT0008319 Pan troglodytes miR-760
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>sly-miR171d MIMAT0007925 Solanum lycopersicum miR171d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>sly-miR171b MIMAT0007923 Solanum lycopersicum miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>vvi-miR171g MIMAT0006555 Vitis vinifera miR171g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mml-miR-505-5p MIMAT0026892 Macaca mulatta miR-505-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggctcc 7
||||||
Sbjct: 8 ggctcc 3
>gga-miR-1712-5p MIMAT0007607 Gallus gallus miR-1712-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggctcc 7
||||||
Sbjct: 1 ggctcc 6
>gga-miR-1648-5p MIMAT0007524 Gallus gallus miR-1648-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>mdo-miR-1548-5p MIMAT0026772 Monodelphis domestica miR-1548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggctcc 7
||||||
Sbjct: 3 ggctcc 8
>vvi-miR171f MIMAT0005696 Vitis vinifera miR171f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bna-miR171e MIMAT0005609 Brassica napus miR171e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bna-miR171d MIMAT0005608 Brassica napus miR171d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bna-miR171c MIMAT0005607 Brassica napus miR171c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bna-miR171b MIMAT0005606 Brassica napus miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>bna-miR171a MIMAT0005605 Brassica napus miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>rno-miR-760-3p MIMAT0005337 Rattus norvegicus miR-760-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>smo-miR171a MIMAT0005223 Selaginella moellendorffii miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ppt-miR171b MIMAT0004376 Physcomitrella patens miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>mtr-miR171f MIMAT0011113 Medicago truncatula miR171f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>hsa-miR-760 MIMAT0004957 Homo sapiens miR-760
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>ath-miR845a MIMAT0004268 Arabidopsis thaliana miR845a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>mmu-miR-760-3p MIMAT0003898 Mus musculus miR-760-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggctc 6
||||||
Sbjct: 1 cggctc 6
>ptc-miR171b MIMAT0001984 Populus trichocarpa miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ptc-miR171a-3p MIMAT0001983 Populus trichocarpa miR171a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>sbi-miR171f MIMAT0001756 Sorghum bicolor miR171f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>zma-miR171h-3p MIMAT0001746 Zea mays miR171h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>zma-miR171k-3p MIMAT0001745 Zea mays miR171k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>zma-miR171f-3p MIMAT0001695 Zea mays miR171f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>sbi-miR171e MIMAT0001466 Sorghum bicolor miR171e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>zma-miR171b-3p MIMAT0001386 Zea mays miR171b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>osa-miR171h MIMAT0001077 Oryza sativa miR171h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ath-miR171c-3p MIMAT0000921 Arabidopsis thaliana miR171c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
>ath-miR171b-3p MIMAT0000920 Arabidopsis thaliana miR171b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggctc 6
||||||
Sbjct: 8 cggctc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 145
Number of extensions: 143
Number of successful extensions: 102
Number of sequences better than 100.0: 102
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 102
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
