BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-3rc-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B3RC-3p MIMAT0031765 Herpes B miR-B3RC-3p 16 6.9
ggo-miR-760 MIMAT0024132 Gorilla gorilla miR-760 16 6.9
ppy-miR-760 MIMAT0016104 Pongo pygmaeus miR-760 16 6.9
aly-miR845a-3p MIMAT0017632 Arabidopsis lyrata miR845a-3p 16 6.9
mml-miR-760 MIMAT0012788 Macaca mulatta miR-760 16 6.9
bmo-miR-306a-3p MIMAT0015303 Bombyx mori miR-306a-3p 16 6.9
bta-miR-760-3p MIMAT0022951 Bos taurus miR-760-3p 16 6.9
ptr-miR-760 MIMAT0008319 Pan troglodytes miR-760 16 6.9
rno-miR-760-3p MIMAT0005337 Rattus norvegicus miR-760-3p 16 6.9
hsa-miR-760 MIMAT0004957 Homo sapiens miR-760 16 6.9
ath-miR845a MIMAT0004268 Arabidopsis thaliana miR845a 16 6.9
mmu-miR-760-3p MIMAT0003898 Mus musculus miR-760-3p 16 6.9
bta-miR-1842 MIMAT0036969 Bos taurus miR-1842 14 27
mmu-miR-7239-3p MIMAT0028447 Mus musculus miR-7239-3p 14 27
hsa-miR-6741-3p MIMAT0027384 Homo sapiens miR-6741-3p 14 27
gga-miR-6683-3p MIMAT0025788 Gallus gallus miR-6683-3p 14 27
ptc-miR6432 MIMAT0025233 Populus trichocarpa miR6432 14 27
mtr-miR5295d MIMAT0021366 Medicago truncatula miR5295d 14 27
mtr-miR5295c MIMAT0021365 Medicago truncatula miR5295c 14 27
mtr-miR5295b MIMAT0021364 Medicago truncatula miR5295b 14 27
mtr-miR5295a MIMAT0021363 Medicago truncatula miR5295a 14 27
bmo-miR-3256 MIMAT0015439 Bombyx mori miR-3256 14 27
eca-miR-1842 MIMAT0013055 Equus caballus miR-1842 14 27
cbr-miR-235b-5p MIMAT0011473 Caenorhabditis briggsae miR-235b-5p 14 27
cfa-miR-1842 MIMAT0006701 Canis familiaris miR-1842 14 27
vvi-miR845e MIMAT0006583 Vitis vinifera miR845e 14 27
vvi-miR845d MIMAT0006582 Vitis vinifera miR845d 14 27
vvi-miR845c MIMAT0006581 Vitis vinifera miR845c 14 27
>hbv-miR-B3RC-3p MIMAT0031765 Herpes B miR-B3RC-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>ggo-miR-760 MIMAT0024132 Gorilla gorilla miR-760
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>ppy-miR-760 MIMAT0016104 Pongo pygmaeus miR-760
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>aly-miR845a-3p MIMAT0017632 Arabidopsis lyrata miR845a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>mml-miR-760 MIMAT0012788 Macaca mulatta miR-760
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>bmo-miR-306a-3p MIMAT0015303 Bombyx mori miR-306a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 cggctctg 8
||||||||
Sbjct: 8 cggctctg 1
>bta-miR-760-3p MIMAT0022951 Bos taurus miR-760-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>ptr-miR-760 MIMAT0008319 Pan troglodytes miR-760
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>rno-miR-760-3p MIMAT0005337 Rattus norvegicus miR-760-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>hsa-miR-760 MIMAT0004957 Homo sapiens miR-760
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>ath-miR845a MIMAT0004268 Arabidopsis thaliana miR845a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>mmu-miR-760-3p MIMAT0003898 Mus musculus miR-760-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggctctg 8
||||||||
Sbjct: 1 cggctctg 8
>bta-miR-1842 MIMAT0036969 Bos taurus miR-1842
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
>mmu-miR-7239-3p MIMAT0028447 Mus musculus miR-7239-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
>hsa-miR-6741-3p MIMAT0027384 Homo sapiens miR-6741-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctct 7
|||||||
Sbjct: 2 cggctct 8
>gga-miR-6683-3p MIMAT0025788 Gallus gallus miR-6683-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctctg 8
|||||||
Sbjct: 8 ggctctg 2
>ptc-miR6432 MIMAT0025233 Populus trichocarpa miR6432
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctct 7
|||||||
Sbjct: 1 cggctct 7
>mtr-miR5295d MIMAT0021366 Medicago truncatula miR5295d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctct 7
|||||||
Sbjct: 2 cggctct 8
>mtr-miR5295c MIMAT0021365 Medicago truncatula miR5295c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctct 7
|||||||
Sbjct: 2 cggctct 8
>mtr-miR5295b MIMAT0021364 Medicago truncatula miR5295b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctct 7
|||||||
Sbjct: 2 cggctct 8
>mtr-miR5295a MIMAT0021363 Medicago truncatula miR5295a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctct 7
|||||||
Sbjct: 2 cggctct 8
>bmo-miR-3256 MIMAT0015439 Bombyx mori miR-3256
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
>eca-miR-1842 MIMAT0013055 Equus caballus miR-1842
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
>cbr-miR-235b-5p MIMAT0011473 Caenorhabditis briggsae
miR-235b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
>cfa-miR-1842 MIMAT0006701 Canis familiaris miR-1842
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
>vvi-miR845e MIMAT0006583 Vitis vinifera miR845e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
>vvi-miR845d MIMAT0006582 Vitis vinifera miR845d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
>vvi-miR845c MIMAT0006581 Vitis vinifera miR845c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctctg 8
|||||||
Sbjct: 2 ggctctg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 265
Number of extensions: 225
Number of successful extensions: 175
Number of sequences better than 100.0: 28
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
