BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b8-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-2c-3p MIMAT0035277 Gyrodactylus salaris miR-2c-3p 14 27
pxy-miR-2b MIMAT0033803 Plutella xylostella miR-2b 14 27
sma-miR-2f-3p MIMAT0033691 Schistosoma mansoni miR-2f-3p 14 27
hsa-miR-7974 MIMAT0031177 Homo sapiens miR-7974 14 27
mmu-miR-7677-3p MIMAT0029869 Mus musculus miR-7677-3p 14 27
mdo-miR-7334-5p MIMAT0028676 Monodelphis domestica miR-7334-5p 14 27
mdo-miR-7289-3p MIMAT0028561 Monodelphis domestica miR-7289-3p 14 27
blv-miR-B1-5p MIMAT0027346 Bovine leukemia miR-B1-5p 14 27
gga-miR-3594-5p MIMAT0025641 Gallus gallus miR-3594-5p 14 27
gga-miR-6551-3p MIMAT0025610 Gallus gallus miR-6551-3p 14 27
sma-miR-2a-3p MIMAT0025030 Schistosoma mansoni miR-2a-3p 14 27
mse-miR-2b MIMAT0024480 Manduca sexta miR-2b 14 27
mse-miR-2a MIMAT0024479 Manduca sexta miR-2a 14 27
mse-miR-31 MIMAT0024447 Manduca sexta miR-31 14 27
tur-miR-5728-1-5p MIMAT0023032 Tetranychus urticae miR-5728-1-5p 14 27
tur-miR-5733-3p MIMAT0023065 Tetranychus urticae miR-5733-3p 14 27
emu-miR-2c-3p MIMAT0020257 Echinococcus multilocularis miR-2c-3p 14 27
egr-miR-2c-3p MIMAT0020232 Echinococcus granulosus miR-2c-3p 14 27
sja-miR-2a-3p MIMAT0016246 Schistosoma japonicum miR-2a-3p 14 27
tgu-miR-2993 MIMAT0014550 Taeniopygia guttata miR-2993 14 27
mtr-miR2623 MIMAT0013343 Medicago truncatula miR2623 14 27
cte-miR-2b MIMAT0009504 Capitella teleta miR-2b 14 27
dvi-miR-313-5p MIMAT0032050 Drosophila virilis miR-313-5p 14 27
bmo-miR-31-3p MIMAT0015242 Bombyx mori miR-31-3p 14 27
sme-miR-2d-3p MIMAT0003968 Schmidtea mediterranea miR-2d-3p 14 27
sme-miR-2c-3p MIMAT0003967 Schmidtea mediterranea miR-2c-3p 14 27
sme-miR-2b-3p MIMAT0003966 Schmidtea mediterranea miR-2b-3p 14 27
>gsa-miR-2c-3p MIMAT0035277 Gyrodactylus salaris miR-2c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>pxy-miR-2b MIMAT0033803 Plutella xylostella miR-2b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>sma-miR-2f-3p MIMAT0033691 Schistosoma mansoni miR-2f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>hsa-miR-7974 MIMAT0031177 Homo sapiens miR-7974
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctgtg 8
|||||||
Sbjct: 2 ggctgtg 8
>mmu-miR-7677-3p MIMAT0029869 Mus musculus miR-7677-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctgt 7
|||||||
Sbjct: 2 cggctgt 8
>mdo-miR-7334-5p MIMAT0028676 Monodelphis domestica miR-7334-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctgtg 8
|||||||
Sbjct: 2 ggctgtg 8
>mdo-miR-7289-3p MIMAT0028561 Monodelphis domestica miR-7289-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 7 ggctgtg 1
>blv-miR-B1-5p MIMAT0027346 Bovine leukemia miR-B1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctgtg 8
|||||||
Sbjct: 2 ggctgtg 8
>gga-miR-3594-5p MIMAT0025641 Gallus gallus miR-3594-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>gga-miR-6551-3p MIMAT0025610 Gallus gallus miR-6551-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctgtg 8
|||||||
Sbjct: 2 ggctgtg 8
>sma-miR-2a-3p MIMAT0025030 Schistosoma mansoni miR-2a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>mse-miR-2b MIMAT0024480 Manduca sexta miR-2b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>mse-miR-2a MIMAT0024479 Manduca sexta miR-2a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>mse-miR-31 MIMAT0024447 Manduca sexta miR-31
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctgtg 8
|||||||
Sbjct: 1 ggctgtg 7
>tur-miR-5728-1-5p MIMAT0023032 Tetranychus urticae
miR-5728-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cggctgt 7
|||||||
Sbjct: 7 cggctgt 1
>tur-miR-5733-3p MIMAT0023065 Tetranychus urticae miR-5733-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctgtg 8
|||||||
Sbjct: 2 ggctgtg 8
>emu-miR-2c-3p MIMAT0020257 Echinococcus multilocularis
miR-2c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>egr-miR-2c-3p MIMAT0020232 Echinococcus granulosus miR-2c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>sja-miR-2a-3p MIMAT0016246 Schistosoma japonicum miR-2a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>tgu-miR-2993 MIMAT0014550 Taeniopygia guttata miR-2993
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctgt 7
|||||||
Sbjct: 2 cggctgt 8
>mtr-miR2623 MIMAT0013343 Medicago truncatula miR2623
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctgt 7
|||||||
Sbjct: 2 cggctgt 8
>cte-miR-2b MIMAT0009504 Capitella teleta miR-2b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>dvi-miR-313-5p MIMAT0032050 Drosophila virilis miR-313-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggctgt 7
|||||||
Sbjct: 2 cggctgt 8
>bmo-miR-31-3p MIMAT0015242 Bombyx mori miR-31-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctgtg 8
|||||||
Sbjct: 1 ggctgtg 7
>sme-miR-2d-3p MIMAT0003968 Schmidtea mediterranea miR-2d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>sme-miR-2c-3p MIMAT0003967 Schmidtea mediterranea miR-2c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
>sme-miR-2b-3p MIMAT0003966 Schmidtea mediterranea miR-2b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctgtg 8
|||||||
Sbjct: 8 ggctgtg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 165
Number of extensions: 138
Number of successful extensions: 109
Number of sequences better than 100.0: 27
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 27
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
