BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s34
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cel-miR-8187-5p MIMAT0032787 Caenorhabditis elegans miR-8187-5p 14 20
bdi-miR7763-3p MIMAT0030273 Brachypodium distachyon miR7763-3p 14 20
bmo-miR-2757-5p MIMAT0013627 Bombyx mori miR-2757-5p 14 20
ata-miR2118b-3p MIMAT0037221 Aegilops tauschii miR2118b-3p 12 80
ata-miR2118b-5p MIMAT0037220 Aegilops tauschii miR2118b-5p 12 80
ata-miR2118a-3p MIMAT0037181 Aegilops tauschii miR2118a-3p 12 80
ata-miR166b-5p MIMAT0037126 Aegilops tauschii miR166b-5p 12 80
rno-miR-1247-3p MIMAT0035722 Rattus norvegicus miR-1247-3p 12 80
eca-miR-9047 MIMAT0034591 Equus caballus miR-9047 12 80
ppc-miR-8297-5p MIMAT0033111 Pristionchus pacificus miR-8297-5p 12 80
cel-miR-8190-5p MIMAT0032793 Caenorhabditis elegans miR-8190-5p 12 80
ssa-miR-459-3p MIMAT0032650 Salmo salar miR-459-3p 12 80
ssa-miR-205a-2-3p MIMAT0032494 Salmo salar miR-205a-2-3p 12 80
ssa-miR-205a-3p MIMAT0032493 Salmo salar miR-205a-3p 12 80
cpa-miR172b MIMAT0031811 Carica papaya miR172b 12 80
cpa-miR172a MIMAT0031810 Carica papaya miR172a 12 80
bdi-miR395o-5p MIMAT0030093 Brachypodium distachyon miR395o-5p 12 80
mml-miR-1247-3p MIMAT0028359 Macaca mulatta miR-1247-3p 12 80
dev-miR-D1-5p MIMAT0028169 Duck enteritis miR-D1-5p 12 80
ccr-miR-459-3p MIMAT0026305 Cyprinus carpio miR-459-3p 12 80
bta-miR-1247-3p MIMAT0025550 Bos taurus miR-1247-3p 12 80
ptc-miR6427-3p MIMAT0025228 Populus trichocarpa miR6427-3p 12 80
nta-miR482d MIMAT0024776 Nicotiana tabacum miR482d 12 80
mtr-miR5297 MIMAT0021368 Medicago truncatula miR5297 12 80
bdi-miR395j-5p MIMAT0027093 Brachypodium distachyon miR395j-5p 12 80
osa-miR5072 MIMAT0020552 Oryza sativa miR5072 12 80
hsa-miR-4681 MIMAT0019766 Homo sapiens miR-4681 12 80
cin-miR-4183-5p MIMAT0016798 Ciona intestinalis miR-4183-5p 12 80
esi-miR3460-5p MIMAT0017761 Ectocarpus siliculosus miR3460-5p 12 80
ssc-miR-425-3p MIMAT0013918 Sus scrofa miR-425-3p 12 80
bta-miR-2403 MIMAT0011960 Bos taurus miR-2403 12 80
zma-miR2118b MIMAT0011761 Zea mays miR2118b 12 80
osa-miR2118q MIMAT0011756 Oryza sativa miR2118q 12 80
osa-miR2118p MIMAT0011755 Oryza sativa miR2118p 12 80
osa-miR2118n MIMAT0011753 Oryza sativa miR2118n 12 80
osa-miR2118c MIMAT0011742 Oryza sativa miR2118c 12 80
osa-miR2118b MIMAT0011741 Oryza sativa miR2118b 12 80
bmo-miR-190-3p MIMAT0015287 Bombyx mori miR-190-3p 12 80
rno-miR-425-3p MIMAT0017306 Rattus norvegicus miR-425-3p 12 80
ath-miR822-5p MIMAT0004239 Arabidopsis thaliana miR822-5p 12 80
mdo-miR-425-3p MIMAT0004153 Monodelphis domestica miR-425-3p 12 80
bta-miR-425-3p MIMAT0003833 Bos taurus miR-425-3p 12 80
ebv-miR-BART19-5p MIMAT0004836 Epstein Barr miR-BART19-5p 12 80
mmu-miR-1247-3p MIMAT0014801 Mus musculus miR-1247-3p 12 80
dre-miR-459-3p MIMAT0003408 Danio rerio miR-459-3p 12 80
hsa-miR-425-3p MIMAT0001343 Homo sapiens miR-425-3p 12 80
mmu-miR-425-3p MIMAT0001342 Mus musculus miR-425-3p 12 80
>cel-miR-8187-5p MIMAT0032787 Caenorhabditis elegans miR-8187-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgggaat 7
|||||||
Sbjct: 2 cgggaat 8
>bdi-miR7763-3p MIMAT0030273 Brachypodium distachyon miR7763-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgggaat 7
|||||||
Sbjct: 7 cgggaat 1
>bmo-miR-2757-5p MIMAT0013627 Bombyx mori miR-2757-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgggaat 7
|||||||
Sbjct: 2 cgggaat 8
>ata-miR2118b-3p MIMAT0037221 Aegilops tauschii miR2118b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>ata-miR2118b-5p MIMAT0037220 Aegilops tauschii miR2118b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 6 cgggaa 1
>ata-miR2118a-3p MIMAT0037181 Aegilops tauschii miR2118a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>ata-miR166b-5p MIMAT0037126 Aegilops tauschii miR166b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>rno-miR-1247-3p MIMAT0035722 Rattus norvegicus miR-1247-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 1 cgggaa 6
>eca-miR-9047 MIMAT0034591 Equus caballus miR-9047
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 8 cgggaa 3
>ppc-miR-8297-5p MIMAT0033111 Pristionchus pacificus miR-8297-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 6 gggaat 1
>cel-miR-8190-5p MIMAT0032793 Caenorhabditis elegans miR-8190-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 1 cgggaa 6
>ssa-miR-459-3p MIMAT0032650 Salmo salar miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>ssa-miR-205a-2-3p MIMAT0032494 Salmo salar miR-205a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 6 gggaat 1
>ssa-miR-205a-3p MIMAT0032493 Salmo salar miR-205a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 6 gggaat 1
>cpa-miR172b MIMAT0031811 Carica papaya miR172b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>cpa-miR172a MIMAT0031810 Carica papaya miR172a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>bdi-miR395o-5p MIMAT0030093 Brachypodium distachyon miR395o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 6 gggaat 1
>mml-miR-1247-3p MIMAT0028359 Macaca mulatta miR-1247-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 1 cgggaa 6
>dev-miR-D1-5p MIMAT0028169 Duck enteritis miR-D1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>ccr-miR-459-3p MIMAT0026305 Cyprinus carpio miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>bta-miR-1247-3p MIMAT0025550 Bos taurus miR-1247-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 1 cgggaa 6
>ptc-miR6427-3p MIMAT0025228 Populus trichocarpa miR6427-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>nta-miR482d MIMAT0024776 Nicotiana tabacum miR482d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 6 cgggaa 1
>mtr-miR5297 MIMAT0021368 Medicago truncatula miR5297
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>bdi-miR395j-5p MIMAT0027093 Brachypodium distachyon miR395j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 8 cgggaa 3
>osa-miR5072 MIMAT0020552 Oryza sativa miR5072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 8 gggaat 3
>hsa-miR-4681 MIMAT0019766 Homo sapiens miR-4681
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>cin-miR-4183-5p MIMAT0016798 Ciona intestinalis miR-4183-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>esi-miR3460-5p MIMAT0017761 Ectocarpus siliculosus miR3460-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 1 gggaat 6
>ssc-miR-425-3p MIMAT0013918 Sus scrofa miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>bta-miR-2403 MIMAT0011960 Bos taurus miR-2403
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>zma-miR2118b MIMAT0011761 Zea mays miR2118b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 6 cgggaa 1
>osa-miR2118q MIMAT0011756 Oryza sativa miR2118q
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 6 cgggaa 1
>osa-miR2118p MIMAT0011755 Oryza sativa miR2118p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 6 cgggaa 1
>osa-miR2118n MIMAT0011753 Oryza sativa miR2118n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 6 cgggaa 1
>osa-miR2118c MIMAT0011742 Oryza sativa miR2118c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 6 cgggaa 1
>osa-miR2118b MIMAT0011741 Oryza sativa miR2118b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgggaa 6
||||||
Sbjct: 6 cgggaa 1
>bmo-miR-190-3p MIMAT0015287 Bombyx mori miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>rno-miR-425-3p MIMAT0017306 Rattus norvegicus miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>ath-miR822-5p MIMAT0004239 Arabidopsis thaliana miR822-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>mdo-miR-425-3p MIMAT0004153 Monodelphis domestica miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>bta-miR-425-3p MIMAT0003833 Bos taurus miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>ebv-miR-BART19-5p MIMAT0004836 Epstein Barr miR-BART19-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggaat 7
||||||
Sbjct: 8 gggaat 3
>mmu-miR-1247-3p MIMAT0014801 Mus musculus miR-1247-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 1 cgggaa 6
>dre-miR-459-3p MIMAT0003408 Danio rerio miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggaat 7
||||||
Sbjct: 3 gggaat 8
>hsa-miR-425-3p MIMAT0001343 Homo sapiens miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
>mmu-miR-425-3p MIMAT0001342 Mus musculus miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgggaa 6
||||||
Sbjct: 3 cgggaa 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 64
Number of extensions: 61
Number of successful extensions: 47
Number of sequences better than 100.0: 47
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 47
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
