BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart6-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175 16 6.9
ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p 16 6.9
ame-miR-9869 MIMAT0037273 Apis mellifera miR-9869 14 27
chi-miR-542-5p MIMAT0036272 Capra hircus miR-542-5p 14 27
dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster miR-9382-3p 14 27
asu-miR-36e-5p MIMAT0021447 Ascaris suum miR-36e-5p 14 27
asu-miR-36c-5p MIMAT0021443 Ascaris suum miR-36c-5p 14 27
cel-miR-4932 MIMAT0020138 Caenorhabditis elegans miR-4932 14 27
ppy-miR-542-5p MIMAT0015991 Pongo pygmaeus miR-542-5p 14 27
ssc-miR-542-5p MIMAT0013924 Sus scrofa miR-542-5p 14 27
bta-miR-542-5p MIMAT0013594 Bos taurus miR-542-5p 14 27
mml-miR-542-5p MIMAT0006406 Macaca mulatta miR-542-5p 14 27
hsa-miR-542-5p MIMAT0003340 Homo sapiens miR-542-5p 14 27
>ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 cggggatc 8
||||||||
Sbjct: 8 cggggatc 1
>ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cggggatc 8
||||||||
Sbjct: 1 cggggatc 8
>ame-miR-9869 MIMAT0037273 Apis mellifera miR-9869
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 2 cggggat 8
>chi-miR-542-5p MIMAT0036272 Capra hircus miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 2 cggggat 8
>dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster
miR-9382-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cggggat 7
|||||||
Sbjct: 7 cggggat 1
>asu-miR-36e-5p MIMAT0021447 Ascaris suum miR-36e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 1 cggggat 7
>asu-miR-36c-5p MIMAT0021443 Ascaris suum miR-36c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 1 cggggat 7
>cel-miR-4932 MIMAT0020138 Caenorhabditis elegans miR-4932
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggatc 8
|||||||
Sbjct: 1 ggggatc 7
>ppy-miR-542-5p MIMAT0015991 Pongo pygmaeus miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 2 cggggat 8
>ssc-miR-542-5p MIMAT0013924 Sus scrofa miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 2 cggggat 8
>bta-miR-542-5p MIMAT0013594 Bos taurus miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 2 cggggat 8
>mml-miR-542-5p MIMAT0006406 Macaca mulatta miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 2 cggggat 8
>hsa-miR-542-5p MIMAT0003340 Homo sapiens miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggggat 7
|||||||
Sbjct: 2 cggggat 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 120
Number of extensions: 105
Number of successful extensions: 79
Number of sequences better than 100.0: 13
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
