BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-2-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tch-miR-486-3p MIMAT0036553 Tupaia chinensis miR-486-3p                14      27
pxy-miR-8532-5p MIMAT0033777 Plutella xylostella miR-8532-5p           14      27
mdo-miR-7277-3p MIMAT0028529 Monodelphis domestica miR-7277-3p         14      27
hsa-miR-6775-5p MIMAT0027450 Homo sapiens miR-6775-5p                  14      27
cgr-miR-486-3p MIMAT0023968 Cricetulus griseus miR-486-3p              14      27
hsa-miR-5090 MIMAT0021082 Homo sapiens miR-5090                        14      27
cin-miR-4116-5p MIMAT0016707 Ciona intestinalis miR-4116-5p            14      27
mmu-miR-486b-3p MIMAT0014944 Mus musculus miR-486b-3p                  14      27
eca-miR-486-3p MIMAT0013187 Equus caballus miR-486-3p                  14      27
dme-miR-2496-3p MIMAT0012207 Drosophila melanogaster miR-2496-3p       14      27
cfa-miR-486-3p MIMAT0032036 Canis familiaris miR-486-3p                14      27
mml-miR-486-3p MIMAT0006345 Macaca mulatta miR-486-3p                  14      27
mmu-miR-486a-3p MIMAT0017206 Mus musculus miR-486a-3p                  14      27
hsa-miR-486-3p MIMAT0004762 Homo sapiens miR-486-3p                    14      27
>tch-miR-486-3p MIMAT0036553 Tupaia chinensis miR-486-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
>pxy-miR-8532-5p MIMAT0033777 Plutella xylostella miR-8532-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
>mdo-miR-7277-3p MIMAT0028529 Monodelphis domestica miR-7277-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
>hsa-miR-6775-5p MIMAT0027450 Homo sapiens miR-6775-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 2 cggggca 8
>cgr-miR-486-3p MIMAT0023968 Cricetulus griseus miR-486-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
>hsa-miR-5090 MIMAT0021082 Homo sapiens miR-5090
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 2 cggggca 8
>cin-miR-4116-5p MIMAT0016707 Ciona intestinalis miR-4116-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ggggcaa 8
         |||||||
Sbjct: 1 ggggcaa 7
>mmu-miR-486b-3p MIMAT0014944 Mus musculus miR-486b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
>eca-miR-486-3p MIMAT0013187 Equus caballus miR-486-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
>dme-miR-2496-3p MIMAT0012207 Drosophila melanogaster
         miR-2496-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 2 cggggca 8
>cfa-miR-486-3p MIMAT0032036 Canis familiaris miR-486-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 2 cggggca 8
>mml-miR-486-3p MIMAT0006345 Macaca mulatta miR-486-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
>mmu-miR-486a-3p MIMAT0017206 Mus musculus miR-486a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
>hsa-miR-486-3p MIMAT0004762 Homo sapiens miR-486-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cggggca 7
         |||||||
Sbjct: 1 cggggca 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 159
Number of extensions: 145
Number of successful extensions: 121
Number of sequences better than 100.0: 14
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)