BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14 14 20
prd-miR-7911b-5p MIMAT0030648 Panagrellus redivivus miR-7911b-5p 14 20
prd-miR-7911a-5p MIMAT0030646 Panagrellus redivivus miR-7911a-5p 14 20
prv-miR-LLT7 MIMAT0025310 Pseudorabies virus miR-LLT7 14 20
aca-miR-5404 MIMAT0022017 Anolis carolinensis miR-5404 14 20
efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208 12 80
efu-miR-9200b MIMAT0034786 Eptesicus fuscus miR-9200b 12 80
mdo-miR-7269-3p MIMAT0028509 Monodelphis domestica miR-7269-3p 12 80
ssc-miR-7137-5p MIMAT0028149 Sus scrofa miR-7137-5p 12 80
hsa-miR-7109-5p MIMAT0028115 Homo sapiens miR-7109-5p 12 80
mmu-miR-6980-5p MIMAT0027862 Mus musculus miR-6980-5p 12 80
mmu-miR-6909-5p MIMAT0027718 Mus musculus miR-6909-5p 12 80
hsa-miR-6752-5p MIMAT0027404 Homo sapiens miR-6752-5p 12 80
hsa-miR-4525 MIMAT0019064 Homo sapiens miR-4525 12 80
hsv2-miR-H5 MIMAT0015650 Herpes Simplex miR-H5 12 80
osa-miR2919 MIMAT0014050 Oryza sativa miR2919 12 80
bta-miR-2326 MIMAT0011855 Bos taurus miR-2326 12 80
bta-miR-2305 MIMAT0011817 Bos taurus miR-2305 12 80
hsv1-miR-H5-5p MIMAT0015280 Herpes Simplex miR-H5-5p 12 80
mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895 12 80
hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p 12 80
gga-miR-30b-3p MIMAT0026512 Gallus gallus miR-30b-3p 12 80
hsa-miR-328-5p MIMAT0026486 Homo sapiens miR-328-5p 12 80
mmu-miR-328-5p MIMAT0017030 Mus musculus miR-328-5p 12 80
rno-miR-328a-5p MIMAT0017029 Rattus norvegicus miR-328a-5p 12 80
>bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgggggg 7
|||||||
Sbjct: 1 cgggggg 7
>prd-miR-7911b-5p MIMAT0030648 Panagrellus redivivus
miR-7911b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgggggg 7
|||||||
Sbjct: 8 cgggggg 2
>prd-miR-7911a-5p MIMAT0030646 Panagrellus redivivus
miR-7911a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgggggg 7
|||||||
Sbjct: 8 cgggggg 2
>prv-miR-LLT7 MIMAT0025310 Pseudorabies virus miR-LLT7
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgggggg 7
|||||||
Sbjct: 2 cgggggg 8
>aca-miR-5404 MIMAT0022017 Anolis carolinensis miR-5404
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgggggg 7
|||||||
Sbjct: 7 cgggggg 1
>efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggggg 6
||||||
Sbjct: 8 cggggg 3
>efu-miR-9200b MIMAT0034786 Eptesicus fuscus miR-9200b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggggg 6
||||||
Sbjct: 3 cggggg 8
>mdo-miR-7269-3p MIMAT0028509 Monodelphis domestica miR-7269-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggg 7
||||||
Sbjct: 6 gggggg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggg 7
||||||
Sbjct: 8 gggggg 3
>ssc-miR-7137-5p MIMAT0028149 Sus scrofa miR-7137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggggg 6
||||||
Sbjct: 1 cggggg 6
>hsa-miR-7109-5p MIMAT0028115 Homo sapiens miR-7109-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 3 gggggg 8
>mmu-miR-6980-5p MIMAT0027862 Mus musculus miR-6980-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 3 gggggg 8
>mmu-miR-6909-5p MIMAT0027718 Mus musculus miR-6909-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 3 gggggg 8
>hsa-miR-6752-5p MIMAT0027404 Homo sapiens miR-6752-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 1 gggggg 6
>hsa-miR-4525 MIMAT0019064 Homo sapiens miR-4525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 1 gggggg 6
>hsv2-miR-H5 MIMAT0015650 Herpes Simplex miR-H5
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 1 gggggg 6
>osa-miR2919 MIMAT0014050 Oryza sativa miR2919
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 3 gggggg 8
>bta-miR-2326 MIMAT0011855 Bos taurus miR-2326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggg 7
||||||
Sbjct: 6 gggggg 1
>bta-miR-2305 MIMAT0011817 Bos taurus miR-2305
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggggg 6
||||||
Sbjct: 1 cggggg 6
>hsv1-miR-H5-5p MIMAT0015280 Herpes Simplex miR-H5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 1 gggggg 6
>mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggggg 6
||||||
Sbjct: 6 cggggg 1
>hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggggg 6
||||||
Sbjct: 1 cggggg 6
>gga-miR-30b-3p MIMAT0026512 Gallus gallus miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 3 gggggg 8
>hsa-miR-328-5p MIMAT0026486 Homo sapiens miR-328-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 1 gggggg 6
>mmu-miR-328-5p MIMAT0017030 Mus musculus miR-328-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 1 gggggg 6
>rno-miR-328a-5p MIMAT0017029 Rattus norvegicus miR-328a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggg 7
||||||
Sbjct: 1 gggggg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 48
Number of extensions: 43
Number of successful extensions: 26
Number of sequences better than 100.0: 25
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
