BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-15-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mcmv-miR-m108-2-5p.1 MIMAT0005560 Mouse cytomegalovirus miR-m108... 14 20
mcmv-miR-m107-1-5p MIMAT0005555 Mouse cytomegalovirus miR-m107-1-5p 14 20
ata-miR169c-3p MIMAT0037137 Aegilops tauschii miR169c-3p 12 80
oha-miR-29a-2-5p MIMAT0036881 Ophiophagus hannah miR-29a-2-5p 12 80
chi-miR-29c-5p MIMAT0036116 Capra hircus miR-29c-5p 12 80
bra-miR9552b-3p MIMAT0035656 Brassica rapa miR9552b-3p 12 80
gsa-miR-2001-5p MIMAT0035280 Gyrodactylus salaris miR-2001-5p 12 80
efu-miR-9305 MIMAT0034978 Eptesicus fuscus miR-9305 12 80
sma-miR-8419-5p MIMAT0033542 Schistosoma mansoni miR-8419-5p 12 80
str-miR-360-5p MIMAT0033460 Strongyloides ratti miR-360-5p 12 80
ppc-miR-360-5p MIMAT0033129 Pristionchus pacificus miR-360-5p 12 80
hsa-miR-7973 MIMAT0031176 Homo sapiens miR-7973 12 80
prd-miR-360-5p MIMAT0030540 Panagrellus redivivus miR-360-5p 12 80
lva-miR-2001-5p MIMAT0032222 Lytechinus variegatus miR-2001-5p 12 80
pmi-miR-2001-5p MIMAT0032175 Patiria miniata miR-2001-5p 12 80
cbn-miR-360 MIMAT0029943 Caenorhabditis brenneri miR-360 12 80
crm-miR-360 MIMAT0029923 Caenorhabditis remanei miR-360 12 80
mdo-miR-7394b-3p MIMAT0028895 Monodelphis domestica miR-7394b-3p 12 80
mdo-miR-7393-3p MIMAT0028885 Monodelphis domestica miR-7393-3p 12 80
mmu-miR-6956-3p MIMAT0027813 Mus musculus miR-6956-3p 12 80
hsa-miR-6808-3p MIMAT0027517 Homo sapiens miR-6808-3p 12 80
ssc-miR-2366 MIMAT0025388 Sus scrofa miR-2366 12 80
mja-miR-6492 MIMAT0025300 Marsupenaeus japonicus miR-6492 12 80
sma-miR-190-3p MIMAT0025028 Schistosoma mansoni miR-190-3p 12 80
cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973 12 80
mmu-miR-3073b-5p MIMAT0022375 Mus musculus miR-3073b-5p 12 80
hsa-miR-5587-5p MIMAT0022289 Homo sapiens miR-5587-5p 12 80
pti-miR5476 MIMAT0022109 Phaeodactylum tricornutum miR5476 12 80
aca-miR-29a-2-5p MIMAT0021913 Anolis carolinensis miR-29a-2-5p 12 80
bdi-miR5178-3p MIMAT0020725 Brachypodium distachyon miR5178-3p 12 80
pma-miR-4627 MIMAT0019661 Petromyzon marinus miR-4627 12 80
pma-miR-4554 MIMAT0019586 Petromyzon marinus miR-4554 12 80
oar-miR-1193-3p MIMAT0019270 Ovis aries miR-1193-3p 12 80
oar-miR-370-5p MIMAT0019243 Ovis aries miR-370-5p 12 80
tca-miR-3809-3p MIMAT0018641 Tribolium castaneum miR-3809-3p 12 80
cin-miR-4038-5p MIMAT0016565 Ciona intestinalis miR-4038-5p 12 80
rno-miR-1193-3p MIMAT0017859 Rattus norvegicus miR-1193-3p 12 80
sja-miR-190-3p MIMAT0016266 Schistosoma japonicum miR-190-3p 12 80
mmu-miR-3073a-5p MIMAT0014854 Mus musculus miR-3073a-5p 12 80
tgu-miR-29a-2-5p MIMAT0031063 Taeniopygia guttata miR-29a-2-5p 12 80
eca-miR-1193 MIMAT0013124 Equus caballus miR-1193 12 80
mtr-miR2658 MIMAT0013459 Medicago truncatula miR2658 12 80
bta-miR-2366 MIMAT0011904 Bos taurus miR-2366 12 80
sme-miR-2166 MIMAT0011263 Schmidtea mediterranea miR-2166 12 80
bta-miR-1193 MIMAT0009965 Bos taurus miR-1193 12 80
spu-miR-2001 MIMAT0009740 Strongylocentrotus purpuratus miR-2001 12 80
sko-miR-2001 MIMAT0009735 Saccoglossus kowalevskii miR-2001 12 80
lgi-miR-2001 MIMAT0009731 Lottia gigantea miR-2001 12 80
isc-miR-2001 MIMAT0009721 Ixodes scapularis miR-2001 12 80
cte-miR-2001 MIMAT0009705 Capitella teleta miR-2001 12 80
bta-miR-29d-5p MIMAT0026919 Bos taurus miR-29d-5p 12 80
mml-miR-370-5p MIMAT0026857 Macaca mulatta miR-370-5p 12 80
oan-miR-1421ak-5p MIMAT0007309 Ornithorhynchus anatinus miR-1421... 12 80
oan-miR-1421x-5p MIMAT0007242 Ornithorhynchus anatinus miR-1421x-5p 12 80
oan-miR-29a-2-5p MIMAT0009167 Ornithorhynchus anatinus miR-29a-2-5p 12 80
mmu-miR-1193-3p MIMAT0005851 Mus musculus miR-1193-3p 12 80
mdv1-miR-M8-3p MIMAT0003929 Mareks disease miR-M8-3p 12 80
xtr-miR-29c-5p MIMAT0003676 Xenopus tropicalis miR-29c-5p 12 80
rno-miR-370-5p MIMAT0017202 Rattus norvegicus miR-370-5p 12 80
kshv-miR-K12-11-5p MIMAT0015213 Kaposi sarcoma-associated miR-K1... 12 80
cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360 12 80
mmu-miR-370-5p MIMAT0017174 Mus musculus miR-370-5p 12 80
rno-miR-29c-5p MIMAT0003154 Rattus norvegicus miR-29c-5p 12 80
hsa-miR-370-5p MIMAT0026483 Homo sapiens miR-370-5p 12 80
cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p 12 80
cel-miR-360-5p MIMAT0015121 Caenorhabditis elegans miR-360-5p 12 80
hsa-miR-29c-5p MIMAT0004673 Homo sapiens miR-29c-5p 12 80
mmu-miR-29c-5p MIMAT0004632 Mus musculus miR-29c-5p 12 80
>mcmv-miR-m108-2-5p.1 MIMAT0005560 Mouse cytomegalovirus
miR-m108-2-5p.1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggtcac 7
|||||||
Sbjct: 2 cggtcac 8
>mcmv-miR-m107-1-5p MIMAT0005555 Mouse cytomegalovirus
miR-m107-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggtcac 7
|||||||
Sbjct: 1 cggtcac 7
>ata-miR169c-3p MIMAT0037137 Aegilops tauschii miR169c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggtca 6
||||||
Sbjct: 3 cggtca 8
>oha-miR-29a-2-5p MIMAT0036881 Ophiophagus hannah miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>chi-miR-29c-5p MIMAT0036116 Capra hircus miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>bra-miR9552b-3p MIMAT0035656 Brassica rapa miR9552b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>gsa-miR-2001-5p MIMAT0035280 Gyrodactylus salaris miR-2001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>efu-miR-9305 MIMAT0034978 Eptesicus fuscus miR-9305
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>sma-miR-8419-5p MIMAT0033542 Schistosoma mansoni miR-8419-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 8 cggtca 3
>str-miR-360-5p MIMAT0033460 Strongyloides ratti miR-360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>ppc-miR-360-5p MIMAT0033129 Pristionchus pacificus miR-360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>hsa-miR-7973 MIMAT0031176 Homo sapiens miR-7973
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 7 ggtcac 2
>prd-miR-360-5p MIMAT0030540 Panagrellus redivivus miR-360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>lva-miR-2001-5p MIMAT0032222 Lytechinus variegatus miR-2001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>pmi-miR-2001-5p MIMAT0032175 Patiria miniata miR-2001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>cbn-miR-360 MIMAT0029943 Caenorhabditis brenneri miR-360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>crm-miR-360 MIMAT0029923 Caenorhabditis remanei miR-360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>mdo-miR-7394b-3p MIMAT0028895 Monodelphis domestica
miR-7394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 7 ggtcac 2
>mdo-miR-7393-3p MIMAT0028885 Monodelphis domestica miR-7393-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 7 ggtcac 2
>mmu-miR-6956-3p MIMAT0027813 Mus musculus miR-6956-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>hsa-miR-6808-3p MIMAT0027517 Homo sapiens miR-6808-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>ssc-miR-2366 MIMAT0025388 Sus scrofa miR-2366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>mja-miR-6492 MIMAT0025300 Marsupenaeus japonicus miR-6492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 8 cggtca 3
>sma-miR-190-3p MIMAT0025028 Schistosoma mansoni miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>mmu-miR-3073b-5p MIMAT0022375 Mus musculus miR-3073b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>hsa-miR-5587-5p MIMAT0022289 Homo sapiens miR-5587-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>pti-miR5476 MIMAT0022109 Phaeodactylum tricornutum miR5476
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>aca-miR-29a-2-5p MIMAT0021913 Anolis carolinensis miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>bdi-miR5178-3p MIMAT0020725 Brachypodium distachyon miR5178-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 8 cggtca 3
>pma-miR-4627 MIMAT0019661 Petromyzon marinus miR-4627
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>pma-miR-4554 MIMAT0019586 Petromyzon marinus miR-4554
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>oar-miR-1193-3p MIMAT0019270 Ovis aries miR-1193-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>oar-miR-370-5p MIMAT0019243 Ovis aries miR-370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>tca-miR-3809-3p MIMAT0018641 Tribolium castaneum miR-3809-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggtca 6
||||||
Sbjct: 3 cggtca 8
>cin-miR-4038-5p MIMAT0016565 Ciona intestinalis miR-4038-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggtca 6
||||||
Sbjct: 1 cggtca 6
>rno-miR-1193-3p MIMAT0017859 Rattus norvegicus miR-1193-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>sja-miR-190-3p MIMAT0016266 Schistosoma japonicum miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>mmu-miR-3073a-5p MIMAT0014854 Mus musculus miR-3073a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>tgu-miR-29a-2-5p MIMAT0031063 Taeniopygia guttata miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>eca-miR-1193 MIMAT0013124 Equus caballus miR-1193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>mtr-miR2658 MIMAT0013459 Medicago truncatula miR2658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>bta-miR-2366 MIMAT0011904 Bos taurus miR-2366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>sme-miR-2166 MIMAT0011263 Schmidtea mediterranea miR-2166
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>bta-miR-1193 MIMAT0009965 Bos taurus miR-1193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>spu-miR-2001 MIMAT0009740 Strongylocentrotus purpuratus
miR-2001
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>sko-miR-2001 MIMAT0009735 Saccoglossus kowalevskii miR-2001
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>lgi-miR-2001 MIMAT0009731 Lottia gigantea miR-2001
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>isc-miR-2001 MIMAT0009721 Ixodes scapularis miR-2001
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>cte-miR-2001 MIMAT0009705 Capitella teleta miR-2001
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>bta-miR-29d-5p MIMAT0026919 Bos taurus miR-29d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>mml-miR-370-5p MIMAT0026857 Macaca mulatta miR-370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>oan-miR-1421ak-5p MIMAT0007309 Ornithorhynchus anatinus
miR-1421ak-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>oan-miR-1421x-5p MIMAT0007242 Ornithorhynchus anatinus
miR-1421x-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>oan-miR-29a-2-5p MIMAT0009167 Ornithorhynchus anatinus
miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>mmu-miR-1193-3p MIMAT0005851 Mus musculus miR-1193-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>mdv1-miR-M8-3p MIMAT0003929 Mareks disease miR-M8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 6 ggtcac 1
>xtr-miR-29c-5p MIMAT0003676 Xenopus tropicalis miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>rno-miR-370-5p MIMAT0017202 Rattus norvegicus miR-370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>kshv-miR-K12-11-5p MIMAT0015213 Kaposi sarcoma-associated
miR-K12-11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 1 ggtcac 6
>cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>mmu-miR-370-5p MIMAT0017174 Mus musculus miR-370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>rno-miR-29c-5p MIMAT0003154 Rattus norvegicus miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>hsa-miR-370-5p MIMAT0026483 Homo sapiens miR-370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcac 7
||||||
Sbjct: 3 ggtcac 8
>cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>cel-miR-360-5p MIMAT0015121 Caenorhabditis elegans miR-360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcac 7
||||||
Sbjct: 8 ggtcac 3
>hsa-miR-29c-5p MIMAT0004673 Homo sapiens miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>mmu-miR-29c-5p MIMAT0004632 Mus musculus miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 83
Number of extensions: 81
Number of successful extensions: 68
Number of sequences better than 100.0: 68
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
