BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-9-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mcmv-miR-m88-1-5p MIMAT0005551 Mouse cytomegalovirus miR-m88-1-5p 14 20
ata-miR169c-3p MIMAT0037137 Aegilops tauschii miR169c-3p 12 80
ata-miR167e-3p MIMAT0037109 Aegilops tauschii miR167e-3p 12 80
oha-miR-29a-2-5p MIMAT0036881 Ophiophagus hannah miR-29a-2-5p 12 80
oha-miR-215-5p MIMAT0036831 Ophiophagus hannah miR-215-5p 12 80
chi-miR-29c-5p MIMAT0036116 Capra hircus miR-29c-5p 12 80
chi-miR-215-5p MIMAT0036060 Capra hircus miR-215-5p 12 80
bra-miR9552b-3p MIMAT0035656 Brassica rapa miR9552b-3p 12 80
sma-miR-8419-5p MIMAT0033542 Schistosoma mansoni miR-8419-5p 12 80
ssa-miR-192a-5p MIMAT0032440 Salmo salar miR-192a-5p 12 80
stu-miR167c-3p MIMAT0031304 Solanum tuberosum miR167c-3p 12 80
bdi-miR7779-5p MIMAT0030312 Brachypodium distachyon miR7779-5p 12 80
ipu-miR-192 MIMAT0029446 Ictalurus punctatus miR-192 12 80
ghr-miR7510a MIMAT0029158 Gossypium hirsutum miR7510a 12 80
ghr-miR7496b MIMAT0029143 Gossypium hirsutum miR7496b 12 80
ghr-miR7496a MIMAT0029142 Gossypium hirsutum miR7496a 12 80
mdo-miR-7395-3p MIMAT0028889 Monodelphis domestica miR-7395-3p 12 80
ccr-miR-192 MIMAT0026250 Cyprinus carpio miR-192 12 80
mmu-miR-6956-3p MIMAT0027813 Mus musculus miR-6956-3p 12 80
mja-miR-6492 MIMAT0025300 Marsupenaeus japonicus miR-6492 12 80
cgr-miR-215-5p MIMAT0023853 Cricetulus griseus miR-215-5p 12 80
cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973 12 80
pti-miR5476 MIMAT0022109 Phaeodactylum tricornutum miR5476 12 80
aca-miR-29a-2-5p MIMAT0021913 Anolis carolinensis miR-29a-2-5p 12 80
aca-miR-215-5p MIMAT0021873 Anolis carolinensis miR-215-5p 12 80
mtr-miR5217 MIMAT0021175 Medicago truncatula miR5217 12 80
bdi-miR5178-3p MIMAT0020725 Brachypodium distachyon miR5178-3p 12 80
osa-miR5162 MIMAT0021115 Oryza sativa miR5162 12 80
tca-miR-3809-3p MIMAT0018641 Tribolium castaneum miR-3809-3p 12 80
cin-miR-4038-5p MIMAT0016565 Ciona intestinalis miR-4038-5p 12 80
aly-miR3433-5p MIMAT0017685 Arabidopsis lyrata miR3433-5p 12 80
aly-miR167b-3p MIMAT0017476 Arabidopsis lyrata miR167b-3p 12 80
tgu-miR-215-5p MIMAT0014577 Taeniopygia guttata miR-215-5p 12 80
tgu-miR-29a-2-5p MIMAT0031063 Taeniopygia guttata miR-29a-2-5p 12 80
eca-miR-215 MIMAT0013190 Equus caballus miR-215 12 80
mdo-miR-215 MIMAT0012751 Monodelphis domestica miR-215 12 80
bta-miR-2431-5p MIMAT0012001 Bos taurus miR-2431-5p 12 80
bta-miR-2427 MIMAT0011997 Bos taurus miR-2427 12 80
ssc-miR-215 MIMAT0010192 Sus scrofa miR-215 12 80
cfa-miR-215 MIMAT0009848 Canis familiaris miR-215 12 80
bta-miR-29d-5p MIMAT0026919 Bos taurus miR-29d-5p 12 80
oan-miR-215-5p MIMAT0007000 Ornithorhynchus anatinus miR-215-5p 12 80
oan-miR-29a-2-5p MIMAT0009167 Ornithorhynchus anatinus miR-29a-2-5p 12 80
mcmv-miR-m107-1-5p MIMAT0005555 Mouse cytomegalovirus miR-m107-1-5p 12 80
bta-miR-215 MIMAT0003797 Bos taurus miR-215 12 80
xtr-miR-29c-5p MIMAT0003676 Xenopus tropicalis miR-29c-5p 12 80
xtr-miR-215 MIMAT0003628 Xenopus tropicalis miR-215 12 80
xtr-miR-192 MIMAT0003615 Xenopus tropicalis miR-192 12 80
rno-miR-215 MIMAT0003118 Rattus norvegicus miR-215 12 80
tni-miR-192 MIMAT0002942 Tetraodon nigroviridis miR-192 12 80
fru-miR-192 MIMAT0002941 Fugu rubripes miR-192 12 80
mne-miR-215 MIMAT0002736 Macaca nemestrina miR-215 12 80
ggo-miR-215 MIMAT0002734 Gorilla gorilla miR-215 12 80
ppy-miR-215 MIMAT0002732 Pongo pygmaeus miR-215 12 80
ptr-miR-215 MIMAT0002730 Pan troglodytes miR-215 12 80
mml-miR-215-5p MIMAT0002728 Macaca mulatta miR-215-5p 12 80
zma-miR167g-3p MIMAT0015188 Zea mays miR167g-3p 12 80
zma-miR167d-3p MIMAT0015144 Zea mays miR167d-3p 12 80
cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360 12 80
dre-miR-192 MIMAT0001275 Danio rerio miR-192 12 80
gga-miR-215-5p MIMAT0001134 Gallus gallus miR-215-5p 12 80
ath-miR167c-3p MIMAT0031917 Arabidopsis thaliana miR167c-3p 12 80
mmu-miR-215-5p MIMAT0000904 Mus musculus miR-215-5p 12 80
rno-miR-29c-5p MIMAT0003154 Rattus norvegicus miR-29c-5p 12 80
cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p 12 80
hsa-miR-29c-5p MIMAT0004673 Homo sapiens miR-29c-5p 12 80
osa-miR167c-3p MIMAT0022860 Oryza sativa miR167c-3p 12 80
mmu-miR-29c-5p MIMAT0004632 Mus musculus miR-29c-5p 12 80
hsa-miR-215-5p MIMAT0000272 Homo sapiens miR-215-5p 12 80
>mcmv-miR-m88-1-5p MIMAT0005551 Mouse cytomegalovirus
miR-m88-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cggtcat 7
|||||||
Sbjct: 7 cggtcat 1
>ata-miR169c-3p MIMAT0037137 Aegilops tauschii miR169c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggtca 6
||||||
Sbjct: 3 cggtca 8
>ata-miR167e-3p MIMAT0037109 Aegilops tauschii miR167e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 1 ggtcat 6
>oha-miR-29a-2-5p MIMAT0036881 Ophiophagus hannah miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>oha-miR-215-5p MIMAT0036831 Ophiophagus hannah miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>chi-miR-29c-5p MIMAT0036116 Capra hircus miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>chi-miR-215-5p MIMAT0036060 Capra hircus miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>bra-miR9552b-3p MIMAT0035656 Brassica rapa miR9552b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>sma-miR-8419-5p MIMAT0033542 Schistosoma mansoni miR-8419-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 8 cggtca 3
>ssa-miR-192a-5p MIMAT0032440 Salmo salar miR-192a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>stu-miR167c-3p MIMAT0031304 Solanum tuberosum miR167c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 1 ggtcat 6
>bdi-miR7779-5p MIMAT0030312 Brachypodium distachyon miR7779-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 3 ggtcat 8
>ipu-miR-192 MIMAT0029446 Ictalurus punctatus miR-192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>ghr-miR7510a MIMAT0029158 Gossypium hirsutum miR7510a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 3 ggtcat 8
>ghr-miR7496b MIMAT0029143 Gossypium hirsutum miR7496b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>ghr-miR7496a MIMAT0029142 Gossypium hirsutum miR7496a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>mdo-miR-7395-3p MIMAT0028889 Monodelphis domestica miR-7395-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>ccr-miR-192 MIMAT0026250 Cyprinus carpio miR-192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>mmu-miR-6956-3p MIMAT0027813 Mus musculus miR-6956-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>mja-miR-6492 MIMAT0025300 Marsupenaeus japonicus miR-6492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 8 cggtca 3
>cgr-miR-215-5p MIMAT0023853 Cricetulus griseus miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>cgr-miR-1973 MIMAT0023835 Cricetulus griseus miR-1973
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>pti-miR5476 MIMAT0022109 Phaeodactylum tricornutum miR5476
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>aca-miR-29a-2-5p MIMAT0021913 Anolis carolinensis miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>aca-miR-215-5p MIMAT0021873 Anolis carolinensis miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>mtr-miR5217 MIMAT0021175 Medicago truncatula miR5217
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 2 ggtcat 7
>bdi-miR5178-3p MIMAT0020725 Brachypodium distachyon miR5178-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 8 cggtca 3
>osa-miR5162 MIMAT0021115 Oryza sativa miR5162
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 8 ggtcat 3
>tca-miR-3809-3p MIMAT0018641 Tribolium castaneum miR-3809-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggtca 6
||||||
Sbjct: 3 cggtca 8
>cin-miR-4038-5p MIMAT0016565 Ciona intestinalis miR-4038-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggtca 6
||||||
Sbjct: 1 cggtca 6
>aly-miR3433-5p MIMAT0017685 Arabidopsis lyrata miR3433-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 1 ggtcat 6
>aly-miR167b-3p MIMAT0017476 Arabidopsis lyrata miR167b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 1 ggtcat 6
>tgu-miR-215-5p MIMAT0014577 Taeniopygia guttata miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>tgu-miR-29a-2-5p MIMAT0031063 Taeniopygia guttata miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>eca-miR-215 MIMAT0013190 Equus caballus miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>mdo-miR-215 MIMAT0012751 Monodelphis domestica miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>bta-miR-2431-5p MIMAT0012001 Bos taurus miR-2431-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 3 ggtcat 8
>bta-miR-2427 MIMAT0011997 Bos taurus miR-2427
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 2 ggtcat 7
>ssc-miR-215 MIMAT0010192 Sus scrofa miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>cfa-miR-215 MIMAT0009848 Canis familiaris miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>bta-miR-29d-5p MIMAT0026919 Bos taurus miR-29d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>oan-miR-215-5p MIMAT0007000 Ornithorhynchus anatinus miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>oan-miR-29a-2-5p MIMAT0009167 Ornithorhynchus anatinus
miR-29a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>mcmv-miR-m107-1-5p MIMAT0005555 Mouse cytomegalovirus
miR-m107-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggtca 6
||||||
Sbjct: 1 cggtca 6
>bta-miR-215 MIMAT0003797 Bos taurus miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>xtr-miR-29c-5p MIMAT0003676 Xenopus tropicalis miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>xtr-miR-215 MIMAT0003628 Xenopus tropicalis miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>xtr-miR-192 MIMAT0003615 Xenopus tropicalis miR-192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>rno-miR-215 MIMAT0003118 Rattus norvegicus miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>tni-miR-192 MIMAT0002942 Tetraodon nigroviridis miR-192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>fru-miR-192 MIMAT0002941 Fugu rubripes miR-192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>mne-miR-215 MIMAT0002736 Macaca nemestrina miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>ggo-miR-215 MIMAT0002734 Gorilla gorilla miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>ppy-miR-215 MIMAT0002732 Pongo pygmaeus miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>ptr-miR-215 MIMAT0002730 Pan troglodytes miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>mml-miR-215-5p MIMAT0002728 Macaca mulatta miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>zma-miR167g-3p MIMAT0015188 Zea mays miR167g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 1 ggtcat 6
>zma-miR167d-3p MIMAT0015144 Zea mays miR167d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 1 ggtcat 6
>cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>dre-miR-192 MIMAT0001275 Danio rerio miR-192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>gga-miR-215-5p MIMAT0001134 Gallus gallus miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>ath-miR167c-3p MIMAT0031917 Arabidopsis thaliana miR167c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 3 ggtcat 8
>mmu-miR-215-5p MIMAT0000904 Mus musculus miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
>rno-miR-29c-5p MIMAT0003154 Rattus norvegicus miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>hsa-miR-29c-5p MIMAT0004673 Homo sapiens miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>osa-miR167c-3p MIMAT0022860 Oryza sativa miR167c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtcat 7
||||||
Sbjct: 1 ggtcat 6
>mmu-miR-29c-5p MIMAT0004632 Mus musculus miR-29c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggtca 6
||||||
Sbjct: 6 cggtca 1
>hsa-miR-215-5p MIMAT0000272 Homo sapiens miR-215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtcat 7
||||||
Sbjct: 6 ggtcat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 91
Number of extensions: 90
Number of successful extensions: 69
Number of sequences better than 100.0: 69
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
