BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR12
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tae-miR9666b-3p MIMAT0035813 Triticum aestivum miR9666b-3p 14 20
cre-miR906-5p MIMAT0004387 Chlamydomonas reinhardtii miR906-5p 14 20
chi-miR-296-3p MIMAT0036111 Capra hircus miR-296-3p 12 80
bdi-miR9496 MIMAT0035505 Brachypodium distachyon miR9496 12 80
efu-miR-9253 MIMAT0034871 Eptesicus fuscus miR-9253 12 80
prd-miR-7877-5p MIMAT0030506 Panagrellus redivivus miR-7877-5p 12 80
gga-miR-7449-3p MIMAT0029053 Gallus gallus miR-7449-3p 12 80
mmu-miR-7066-5p MIMAT0028036 Mus musculus miR-7066-5p 12 80
mmu-miR-6960-3p MIMAT0027821 Mus musculus miR-6960-3p 12 80
gga-miR-6607-5p MIMAT0025701 Gallus gallus miR-6607-5p 12 80
han-miR3440 MIMAT0025524 Helianthus annuus miR3440 12 80
ggo-miR-296 MIMAT0024290 Gorilla gorilla miR-296 12 80
ame-miR-6054 MIMAT0023678 Apis mellifera miR-6054 12 80
hsa-miR-5189-3p MIMAT0027088 Homo sapiens miR-5189-3p 12 80
ath-miR5027 MIMAT0020533 Arabidopsis thaliana miR5027 12 80
hsa-miR-4714-3p MIMAT0019823 Homo sapiens miR-4714-3p 12 80
pma-miR-4603 MIMAT0019637 Petromyzon marinus miR-4603 12 80
ssc-miR-296-3p MIMAT0022958 Sus scrofa miR-296-3p 12 80
cin-miR-4064-3p MIMAT0016617 Ciona intestinalis miR-4064-3p 12 80
aly-miR853-3p MIMAT0017694 Arabidopsis lyrata miR853-3p 12 80
aly-miR839-5p MIMAT0017623 Arabidopsis lyrata miR839-5p 12 80
aly-miR823-3p MIMAT0017602 Arabidopsis lyrata miR823-3p 12 80
hsa-miR-3147 MIMAT0015019 Homo sapiens miR-3147 12 80
ppt-miR2078 MIMAT0010015 Physcomitrella patens miR2078 12 80
mmu-miR-1197-5p MIMAT0017331 Mus musculus miR-1197-5p 12 80
dme-miR-984-3p MIMAT0020881 Drosophila melanogaster miR-984-3p 12 80
ath-miR839-5p MIMAT0004261 Arabidopsis thaliana miR839-5p 12 80
dre-miR-125b-2-3p MIMAT0031964 Danio rerio miR-125b-2-3p 12 80
>tae-miR9666b-3p MIMAT0035813 Triticum aestivum miR9666b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggttgg 7
|||||||
Sbjct: 1 cggttgg 7
>cre-miR906-5p MIMAT0004387 Chlamydomonas reinhardtii miR906-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cggttgg 7
|||||||
Sbjct: 1 cggttgg 7
>chi-miR-296-3p MIMAT0036111 Capra hircus miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
>bdi-miR9496 MIMAT0035505 Brachypodium distachyon miR9496
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
>efu-miR-9253 MIMAT0034871 Eptesicus fuscus miR-9253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttgg 7
||||||
Sbjct: 8 ggttgg 3
>prd-miR-7877-5p MIMAT0030506 Panagrellus redivivus miR-7877-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggttg 6
||||||
Sbjct: 1 cggttg 6
>gga-miR-7449-3p MIMAT0029053 Gallus gallus miR-7449-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
>mmu-miR-7066-5p MIMAT0028036 Mus musculus miR-7066-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
>mmu-miR-6960-3p MIMAT0027821 Mus musculus miR-6960-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttgg 7
||||||
Sbjct: 8 ggttgg 3
>gga-miR-6607-5p MIMAT0025701 Gallus gallus miR-6607-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 1 ggttgg 6
>han-miR3440 MIMAT0025524 Helianthus annuus miR3440
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
>ggo-miR-296 MIMAT0024290 Gorilla gorilla miR-296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
>ame-miR-6054 MIMAT0023678 Apis mellifera miR-6054
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggttg 6
||||||
Sbjct: 3 cggttg 8
>hsa-miR-5189-3p MIMAT0027088 Homo sapiens miR-5189-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttgg 7
||||||
Sbjct: 8 ggttgg 3
>ath-miR5027 MIMAT0020533 Arabidopsis thaliana miR5027
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggttg 6
||||||
Sbjct: 3 cggttg 8
>hsa-miR-4714-3p MIMAT0019823 Homo sapiens miR-4714-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttgg 7
||||||
Sbjct: 6 ggttgg 1
>pma-miR-4603 MIMAT0019637 Petromyzon marinus miR-4603
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggttg 6
||||||
Sbjct: 3 cggttg 8
>ssc-miR-296-3p MIMAT0022958 Sus scrofa miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
>cin-miR-4064-3p MIMAT0016617 Ciona intestinalis miR-4064-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggttg 6
||||||
Sbjct: 8 cggttg 3
>aly-miR853-3p MIMAT0017694 Arabidopsis lyrata miR853-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggttg 6
||||||
Sbjct: 6 cggttg 1
>aly-miR839-5p MIMAT0017623 Arabidopsis lyrata miR839-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttgg 7
||||||
Sbjct: 8 ggttgg 3
>aly-miR823-3p MIMAT0017602 Arabidopsis lyrata miR823-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
>hsa-miR-3147 MIMAT0015019 Homo sapiens miR-3147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 1 ggttgg 6
>ppt-miR2078 MIMAT0010015 Physcomitrella patens miR2078
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 1 ggttgg 6
>mmu-miR-1197-5p MIMAT0017331 Mus musculus miR-1197-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggttg 6
||||||
Sbjct: 1 cggttg 6
>dme-miR-984-3p MIMAT0020881 Drosophila melanogaster miR-984-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttgg 7
||||||
Sbjct: 8 ggttgg 3
>ath-miR839-5p MIMAT0004261 Arabidopsis thaliana miR839-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttgg 7
||||||
Sbjct: 8 ggttgg 3
>dre-miR-125b-2-3p MIMAT0031964 Danio rerio miR-125b-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttgg 7
||||||
Sbjct: 3 ggttgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 62
Number of extensions: 60
Number of successful extensions: 28
Number of sequences better than 100.0: 28
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 28
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
