BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-11-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-11-5p MIMAT0019089 Rhesus lymphocryptovirus miR-rL1... 14 20
gma-miR9764 MIMAT0036401 Glycine max miR9764 12 80
gra-miR8654c MIMAT0034019 Gossypium raimondii miR8654c 12 80
gra-miR8654b MIMAT0034018 Gossypium raimondii miR8654b 12 80
gra-miR8654a MIMAT0034017 Gossypium raimondii miR8654a 12 80
cel-miR-8191-3p MIMAT0032796 Caenorhabditis elegans miR-8191-3p 12 80
ssa-miR-8164-3p MIMAT0032760 Salmo salar miR-8164-3p 12 80
cpa-miR8151 MIMAT0031848 Carica papaya miR8151 12 80
cpa-miR8141 MIMAT0031838 Carica papaya miR8141 12 80
oan-miR-7418-5p MIMAT0028984 Ornithorhynchus anatinus miR-7418-5p 12 80
bma-miR-5877 MIMAT0026376 Brugia malayi miR-5877 12 80
nta-miR6149b MIMAT0024740 Nicotiana tabacum miR6149b 12 80
nta-miR6149a MIMAT0024739 Nicotiana tabacum miR6149a 12 80
cqu-miR-317-5p MIMAT0014384 Culex quinquefasciatus miR-317-5p 12 80
bta-miR-2478 MIMAT0012070 Bos taurus miR-2478 12 80
dvi-miR-317-5p MIMAT0032073 Drosophila virilis miR-317-5p 12 80
dme-miR-iab-8-3p MIMAT0005464 Drosophila melanogaster miR-iab-8-3p 12 80
dme-miR-318-5p MIMAT0020844 Drosophila melanogaster miR-318-5p 12 80
dme-miR-317-5p MIMAT0020843 Drosophila melanogaster miR-317-5p 12 80
>rlcv-miR-rL1-11-5p MIMAT0019089 Rhesus lymphocryptovirus
miR-rL1-11-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtatcc 7
|||||||
Sbjct: 2 cgtatcc 8
>gma-miR9764 MIMAT0036401 Glycine max miR9764
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 7 gtatcc 2
>gra-miR8654c MIMAT0034019 Gossypium raimondii miR8654c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 8 gtatcc 3
>gra-miR8654b MIMAT0034018 Gossypium raimondii miR8654b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 8 gtatcc 3
>gra-miR8654a MIMAT0034017 Gossypium raimondii miR8654a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 8 gtatcc 3
>cel-miR-8191-3p MIMAT0032796 Caenorhabditis elegans miR-8191-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtatcc 7
||||||
Sbjct: 1 gtatcc 6
>ssa-miR-8164-3p MIMAT0032760 Salmo salar miR-8164-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgtatc 6
||||||
Sbjct: 8 cgtatc 3
>cpa-miR8151 MIMAT0031848 Carica papaya miR8151
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 7 gtatcc 2
>cpa-miR8141 MIMAT0031838 Carica papaya miR8141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 7 gtatcc 2
>oan-miR-7418-5p MIMAT0028984 Ornithorhynchus anatinus
miR-7418-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgtatc 6
||||||
Sbjct: 1 cgtatc 6
>bma-miR-5877 MIMAT0026376 Brugia malayi miR-5877
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgtatc 6
||||||
Sbjct: 3 cgtatc 8
>nta-miR6149b MIMAT0024740 Nicotiana tabacum miR6149b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgtatc 6
||||||
Sbjct: 8 cgtatc 3
>nta-miR6149a MIMAT0024739 Nicotiana tabacum miR6149a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgtatc 6
||||||
Sbjct: 8 cgtatc 3
>cqu-miR-317-5p MIMAT0014384 Culex quinquefasciatus miR-317-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 8 gtatcc 3
>bta-miR-2478 MIMAT0012070 Bos taurus miR-2478
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtatcc 7
||||||
Sbjct: 1 gtatcc 6
>dvi-miR-317-5p MIMAT0032073 Drosophila virilis miR-317-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 8 gtatcc 3
>dme-miR-iab-8-3p MIMAT0005464 Drosophila melanogaster
miR-iab-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 6 gtatcc 1
>dme-miR-318-5p MIMAT0020844 Drosophila melanogaster miR-318-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 6 gtatcc 1
>dme-miR-317-5p MIMAT0020843 Drosophila melanogaster miR-317-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatcc 7
||||||
Sbjct: 8 gtatcc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 32
Number of extensions: 31
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
