BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hcmv-miR-ul148d
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-7036a-3p MIMAT0027977 Mus musculus miR-7036a-3p                14      20
osa-miR5793 MIMAT0023260 Oryza sativa miR5793                          14      20
gga-miR-1694 MIMAT0007586 Gallus gallus miR-1694                       14      20
hcmv-miR-UL148D MIMAT0001578 Human cytomegalovirus miR-UL148D          14      20
chi-miR-1224 MIMAT0035919 Capra hircus miR-1224                        12      80
dvi-miR-311-5p MIMAT0035566 Drosophila virilis miR-311-5p              12      80
efu-miR-9249 MIMAT0034866 Eptesicus fuscus miR-9249                    12      80
eca-miR-9148 MIMAT0034724 Equus caballus miR-9148                      12      80
ppc-miR-8315-5p MIMAT0033167 Pristionchus pacificus miR-8315-5p        12      80
ppc-miR-8274-5p MIMAT0033047 Pristionchus pacificus miR-8274-5p        12      80
cel-miR-8207-5p MIMAT0032831 Caenorhabditis elegans miR-8207-5p        12      80
aly-miR2111c-3p MIMAT0031385 Arabidopsis lyrata miR2111c-3p            12      80
prd-miR-7907a-3p MIMAT0030627 Panagrellus redivivus miR-7907a-3p       12      80
prd-miR-7911c-5p MIMAT0030562 Panagrellus redivivus miR-7911c-5p       12      80
cbn-miR-7579 MIMAT0029650 Caenorhabditis brenneri miR-7579             12      80
crm-miR-7579 MIMAT0029610 Caenorhabditis remanei miR-7579              12      80
cbr-miR-7579 MIMAT0029580 Caenorhabditis briggsae miR-7579             12      80
hsa-miR-7154-3p MIMAT0028219 Homo sapiens miR-7154-3p                  12      80
ssc-miR-7138-3p MIMAT0028152 Sus scrofa miR-7138-3p                    12      80
ppe-miR6295 MIMAT0027331 Prunus persica miR6295                        12      80
hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196                       12      80
hco-miR-5945-3p MIMAT0023447 Haemonchus contortus miR-5945-3p          12      80
osa-miR5819 MIMAT0023292 Oryza sativa miR5819                          12      80
gma-miR5767 MIMAT0023164 Glycine max miR5767                           12      80
mtr-miR5224a MIMAT0021182 Medicago truncatula miR5224a                 12      80
hsa-miR-5004-5p MIMAT0021027 Homo sapiens miR-5004-5p                  12      80
hsa-miR-4691-5p MIMAT0019781 Homo sapiens miR-4691-5p                  12      80
bra-miR2111a-3p MIMAT0016369 Brassica rapa miR2111a-3p                 12      80
vvi-miR2111-3p MIMAT0016365 Vitis vinifera miR2111-3p                  12      80
ppy-miR-1224-5p MIMAT0016158 Pongo pygmaeus miR-1224-5p                12      80
ppy-miR-611 MIMAT0016052 Pongo pygmaeus miR-611                        12      80
aly-miR2111a-3p MIMAT0017658 Arabidopsis lyrata miR2111a-3p            12      80
hsa-miR-3131 MIMAT0014996 Homo sapiens miR-3131                        12      80
hsv2-miR-H12 MIMAT0014699 Herpes Simplex miR-H12                       12      80
osa-miR2867-3p MIMAT0020947 Oryza sativa miR2867-3p                    12      80
rno-miR-1224 MIMAT0012827 Rattus norvegicus miR-1224                   12      80
cte-miR-2695 MIMAT0013556 Capitella teleta miR-2695                    12      80
mtr-miR2111m-3p MIMAT0026928 Medicago truncatula miR2111m-3p           12      80
bna-miR2111a-3p MIMAT0011783 Brassica napus miR2111a-3p                12      80
ath-miR2111a-3p MIMAT0011151 Arabidopsis thaliana miR2111a-3p          12      80
bta-miR-1224 MIMAT0009944 Bos taurus miR-1224                          12      80
mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p                  12      80
dvi-miR-92a-5p MIMAT0032099 Drosophila virilis miR-92a-5p              12      80
mml-miR-611 MIMAT0006463 Macaca mulatta miR-611                        12      80
gga-miR-1750 MIMAT0007657 Gallus gallus miR-1750                       12      80
gga-miR-1671 MIMAT0007555 Gallus gallus miR-1671                       12      80
oan-miR-1421aj-5p MIMAT0007307 Ornithorhynchus anatinus miR-1421...    12      80
oan-miR-1421ah-5p MIMAT0007303 Ornithorhynchus anatinus miR-1421...    12      80
oan-miR-1421ac-5p MIMAT0007257 Ornithorhynchus anatinus miR-1421...    12      80
oan-miR-1421m-5p MIMAT0007072 Ornithorhynchus anatinus miR-1421m-5p    12      80
mml-miR-1224-5p MIMAT0005570 Macaca mulatta miR-1224-5p                12      80
ptr-miR-1224-5p MIMAT0005568 Pan troglodytes miR-1224-5p               12      80
cre-miR1143-5p MIMAT0005377 Chlamydomonas reinhardtii miR1143-5p       12      80
tae-miR1124 MIMAT0005359 Triticum aestivum miR1124                     12      80
mmu-miR-1264-5p MIMAT0014802 Mus musculus miR-1264-5p                  12      80
mmu-miR-1224-5p MIMAT0005460 Mus musculus miR-1224-5p                  12      80
hsa-miR-1224-5p MIMAT0005458 Homo sapiens miR-1224-5p                  12      80
hsa-miR-611 MIMAT0003279 Homo sapiens miR-611                          12      80
osa-miR169f.2 MIMAT0020916 Oryza sativa miR169f.2                      12      80
dme-miR-92a-5p MIMAT0020802 Drosophila melanogaster miR-92a-5p         12      80
>mmu-miR-7036a-3p MIMAT0027977 Mus musculus miR-7036a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgtcctc 7
         |||||||
Sbjct: 2 cgtcctc 8
>osa-miR5793 MIMAT0023260 Oryza sativa miR5793
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtcctc 7
         |||||||
Sbjct: 8 cgtcctc 2
>gga-miR-1694 MIMAT0007586 Gallus gallus miR-1694
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtcctc 7
         |||||||
Sbjct: 8 cgtcctc 2
>hcmv-miR-UL148D MIMAT0001578 Human cytomegalovirus miR-UL148D
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgtcctc 7
         |||||||
Sbjct: 2 cgtcctc 8
>chi-miR-1224 MIMAT0035919 Capra hircus miR-1224
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>dvi-miR-311-5p MIMAT0035566 Drosophila virilis miR-311-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 6 cgtcct 1
>efu-miR-9249 MIMAT0034866 Eptesicus fuscus miR-9249
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 7 gtcctc 2
>eca-miR-9148 MIMAT0034724 Equus caballus miR-9148
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 7 gtcctc 2
>ppc-miR-8315-5p MIMAT0033167 Pristionchus pacificus miR-8315-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>ppc-miR-8274-5p MIMAT0033047 Pristionchus pacificus miR-8274-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>cel-miR-8207-5p MIMAT0032831 Caenorhabditis elegans miR-8207-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 3 gtcctc 8
>aly-miR2111c-3p MIMAT0031385 Arabidopsis lyrata miR2111c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>prd-miR-7907a-3p MIMAT0030627 Panagrellus redivivus
         miR-7907a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 6 gtcctc 1
>prd-miR-7911c-5p MIMAT0030562 Panagrellus redivivus
         miR-7911c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>cbn-miR-7579 MIMAT0029650 Caenorhabditis brenneri miR-7579
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 7 gtcctc 2
>crm-miR-7579 MIMAT0029610 Caenorhabditis remanei miR-7579
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 7 gtcctc 2
>cbr-miR-7579 MIMAT0029580 Caenorhabditis briggsae miR-7579
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 7 gtcctc 2
>hsa-miR-7154-3p MIMAT0028219 Homo sapiens miR-7154-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>ssc-miR-7138-3p MIMAT0028152 Sus scrofa miR-7138-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 6 gtcctc 1
>ppe-miR6295 MIMAT0027331 Prunus persica miR6295
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 6 gtcctc 1
>hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 6 cgtcct 1
>hco-miR-5945-3p MIMAT0023447 Haemonchus contortus miR-5945-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 6 gtcctc 1
>osa-miR5819 MIMAT0023292 Oryza sativa miR5819
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 6 cgtcct 1
>gma-miR5767 MIMAT0023164 Glycine max miR5767
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>mtr-miR5224a MIMAT0021182 Medicago truncatula miR5224a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>hsa-miR-5004-5p MIMAT0021027 Homo sapiens miR-5004-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 7 gtcctc 2
>hsa-miR-4691-5p MIMAT0019781 Homo sapiens miR-4691-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>bra-miR2111a-3p MIMAT0016369 Brassica rapa miR2111a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>vvi-miR2111-3p MIMAT0016365 Vitis vinifera miR2111-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>ppy-miR-1224-5p MIMAT0016158 Pongo pygmaeus miR-1224-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>ppy-miR-611 MIMAT0016052 Pongo pygmaeus miR-611
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>aly-miR2111a-3p MIMAT0017658 Arabidopsis lyrata miR2111a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>hsa-miR-3131 MIMAT0014996 Homo sapiens miR-3131
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>hsv2-miR-H12 MIMAT0014699 Herpes Simplex miR-H12
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 8 cgtcct 3
>osa-miR2867-3p MIMAT0020947 Oryza sativa miR2867-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 8 cgtcct 3
>rno-miR-1224 MIMAT0012827 Rattus norvegicus miR-1224
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>cte-miR-2695 MIMAT0013556 Capitella teleta miR-2695
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 6 gtcctc 1
>mtr-miR2111m-3p MIMAT0026928 Medicago truncatula miR2111m-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>bna-miR2111a-3p MIMAT0011783 Brassica napus miR2111a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>ath-miR2111a-3p MIMAT0011151 Arabidopsis thaliana miR2111a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 1 gtcctc 6
>bta-miR-1224 MIMAT0009944 Bos taurus miR-1224
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 6 cgtcct 1
>dvi-miR-92a-5p MIMAT0032099 Drosophila virilis miR-92a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 6 cgtcct 1
>mml-miR-611 MIMAT0006463 Macaca mulatta miR-611
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>gga-miR-1750 MIMAT0007657 Gallus gallus miR-1750
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 7 gtcctc 2
>gga-miR-1671 MIMAT0007555 Gallus gallus miR-1671
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>oan-miR-1421aj-5p MIMAT0007307 Ornithorhynchus anatinus
         miR-1421aj-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>oan-miR-1421ah-5p MIMAT0007303 Ornithorhynchus anatinus
         miR-1421ah-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>oan-miR-1421ac-5p MIMAT0007257 Ornithorhynchus anatinus
         miR-1421ac-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>oan-miR-1421m-5p MIMAT0007072 Ornithorhynchus anatinus
         miR-1421m-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 6 cgtcct 1
>mml-miR-1224-5p MIMAT0005570 Macaca mulatta miR-1224-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>ptr-miR-1224-5p MIMAT0005568 Pan troglodytes miR-1224-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>cre-miR1143-5p MIMAT0005377 Chlamydomonas reinhardtii
         miR1143-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 6 cgtcct 1
>tae-miR1124 MIMAT0005359 Triticum aestivum miR1124
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 8 cgtcct 3
>mmu-miR-1264-5p MIMAT0014802 Mus musculus miR-1264-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 3 gtcctc 8
>mmu-miR-1224-5p MIMAT0005460 Mus musculus miR-1224-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>hsa-miR-1224-5p MIMAT0005458 Homo sapiens miR-1224-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>hsa-miR-611 MIMAT0003279 Homo sapiens miR-611
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 8 gtcctc 3
>osa-miR169f.2 MIMAT0020916 Oryza sativa miR169f.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtcctc 7
         ||||||
Sbjct: 7 gtcctc 2
>dme-miR-92a-5p MIMAT0020802 Drosophila melanogaster miR-92a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cgtcct 6
         ||||||
Sbjct: 6 cgtcct 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 78
Number of extensions: 74
Number of successful extensions: 60
Number of sequences better than 100.0: 60
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 60
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)