BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h4-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tae-miR9657b-3p MIMAT0035811 Triticum aestivum miR9657b-3p 14 20
tae-miR9657c-3p MIMAT0035807 Triticum aestivum miR9657c-3p 14 20
ppc-miR-228-3p MIMAT0032847 Pristionchus pacificus miR-228-3p 14 20
prd-miR-1-5p MIMAT0030720 Panagrellus redivivus miR-1-5p 14 20
hsv2-miR-H4-3p MIMAT0010204 Herpes Simplex miR-H4-3p 14 20
tca-miR-1-5p MIMAT0019092 Tribolium castaneum miR-1-5p 14 20
gga-miR-1595-5p MIMAT0007458 Gallus gallus miR-1595-5p 14 20
bmo-miR-1a-5p MIMAT0015222 Bombyx mori miR-1a-5p 14 20
ata-miR9783-3p MIMAT0037247 Aegilops tauschii miR9783-3p 12 80
ssc-miR-9810-3p MIMAT0037028 Sus scrofa miR-9810-3p 12 80
tae-miR9783 MIMAT0036999 Triticum aestivum miR9783 12 80
oha-miR-218-5p MIMAT0036836 Ophiophagus hannah miR-218-5p 12 80
tch-miR-218-5p MIMAT0036514 Tupaia chinensis miR-218-5p 12 80
ggo-miR-519b MIMAT0036418 Gorilla gorilla miR-519b 12 80
ggo-miR-520f MIMAT0036409 Gorilla gorilla miR-520f 12 80
chi-miR-330-3p MIMAT0036144 Capra hircus miR-330-3p 12 80
chi-miR-218 MIMAT0036066 Capra hircus miR-218 12 80
bra-miR164e-3p MIMAT0035871 Brassica rapa miR164e-3p 12 80
efu-miR-218b MIMAT0035068 Eptesicus fuscus miR-218b 12 80
efu-miR-218a MIMAT0035036 Eptesicus fuscus miR-218a 12 80
efu-miR-9260 MIMAT0034880 Eptesicus fuscus miR-9260 12 80
eca-miR-9060 MIMAT0034605 Equus caballus miR-9060 12 80
cel-miR-8197-5p MIMAT0032807 Caenorhabditis elegans miR-8197-5p 12 80
ssa-miR-218-5p MIMAT0032524 Salmo salar miR-218-5p 12 80
bma-miR-49 MIMAT0031751 Brugia malayi miR-49 12 80
stu-miR8041b-5p MIMAT0031222 Solanum tuberosum miR8041b-5p 12 80
stu-miR8041a-5p MIMAT0031221 Solanum tuberosum miR8041a-5p 12 80
bdi-miR7738-3p MIMAT0030213 Brachypodium distachyon miR7738-3p 12 80
oar-miR-218a MIMAT0030045 Ovis aries miR-218a 12 80
lva-miR-29a-3p MIMAT0032195 Lytechinus variegatus miR-29a-3p 12 80
pmi-miR-29a-3p MIMAT0032145 Patiria miniata miR-29a-3p 12 80
cbn-miR-49 MIMAT0029745 Caenorhabditis brenneri miR-49 12 80
ipu-miR-218b MIMAT0029473 Ictalurus punctatus miR-218b 12 80
ipu-miR-218a MIMAT0029472 Ictalurus punctatus miR-218a 12 80
ccr-miR-218b MIMAT0026272 Cyprinus carpio miR-218b 12 80
ccr-miR-218a MIMAT0026271 Cyprinus carpio miR-218a 12 80
mmu-miR-7026-3p MIMAT0027957 Mus musculus miR-7026-3p 12 80
mmu-miR-7002-3p MIMAT0027907 Mus musculus miR-7002-3p 12 80
hsa-miR-6835-3p MIMAT0027571 Homo sapiens miR-6835-3p 12 80
ssc-miR-218 MIMAT0025371 Sus scrofa miR-218 12 80
cgr-miR-218a MIMAT0023855 Cricetulus griseus miR-218a 12 80
gma-miR2606b MIMAT0023250 Glycine max miR2606b 12 80
gma-miR2606a MIMAT0023226 Glycine max miR2606a 12 80
ola-miR-218b MIMAT0022609 Oryzias latipes miR-218b 12 80
ola-miR-218a MIMAT0022529 Oryzias latipes miR-218a 12 80
cin-miR-5601-5p MIMAT0022325 Ciona intestinalis miR-5601-5p 12 80
aca-miR-218-5p MIMAT0021880 Anolis carolinensis miR-218-5p 12 80
asu-miR-49-3p MIMAT0021460 Ascaris suum miR-49-3p 12 80
ssc-miR-218b MIMAT0020589 Sus scrofa miR-218b 12 80
sko-miR-2006-3p MIMAT0020048 Saccoglossus kowalevskii miR-2006-3p 12 80
pma-miR-218b MIMAT0019531 Petromyzon marinus miR-218b 12 80
pma-miR-218a-5p MIMAT0019529 Petromyzon marinus miR-218a-5p 12 80
hsa-miR-3977 MIMAT0019362 Homo sapiens miR-3977 12 80
tca-miR-3888-5p MIMAT0018874 Tribolium castaneum miR-3888-5p 12 80
ame-miR-3773 MIMAT0018549 Apis mellifera miR-3773 12 80
vvi-miR3628-3p MIMAT0018020 Vitis vinifera miR3628-3p 12 80
vvi-miR3623-3p MIMAT0018008 Vitis vinifera miR3623-3p 12 80
ssc-miR-218-5p MIMAT0022961 Sus scrofa miR-218-5p 12 80
ppy-miR-520f MIMAT0015974 Pongo pygmaeus miR-520f 12 80
aly-miR825-5p MIMAT0017605 Arabidopsis lyrata miR825-5p 12 80
tgu-miR-218-5p MIMAT0014522 Taeniopygia guttata miR-218-5p 12 80
aae-miR-988-5p MIMAT0014280 Aedes aegypti miR-988-5p 12 80
zma-miR164g-3p MIMAT0015319 Zea mays miR164g-3p 12 80
eca-miR-218 MIMAT0012928 Equus caballus miR-218 12 80
crm-miR-49 MIMAT0011508 Caenorhabditis remanei miR-49 12 80
cel-miR-2215-5p MIMAT0011445 Caenorhabditis elegans miR-2215-5p 12 80
spu-miR-29a MIMAT0009656 Strongylocentrotus purpuratus miR-29a 12 80
sko-miR-33-3p MIMAT0009615 Saccoglossus kowalevskii miR-33-3p 12 80
bta-miR-302a MIMAT0009278 Bos taurus miR-302a 12 80
ptr-miR-520f MIMAT0008202 Pan troglodytes miR-520f 12 80
cfa-miR-218 MIMAT0006672 Canis familiaris miR-218 12 80
oan-miR-218-5p MIMAT0006815 Ornithorhynchus anatinus miR-218-5p 12 80
cre-miR1168.2 MIMAT0005425 Chlamydomonas reinhardtii miR1168.2 12 80
ppt-miR1076-3p MIMAT0005207 Physcomitrella patens miR1076-3p 12 80
mdo-miR-218-5p MIMAT0004133 Monodelphis domestica miR-218-5p 12 80
bta-miR-218 MIMAT0003798 Bos taurus miR-218 12 80
xtr-miR-218 MIMAT0003631 Xenopus tropicalis miR-218 12 80
mmu-miR-302c-3p MIMAT0003376 Mus musculus miR-302c-3p 12 80
osa-miR535-3p MIMAT0022927 Oryza sativa miR535-3p 12 80
tni-miR-218a MIMAT0002994 Tetraodon nigroviridis miR-218a 12 80
fru-miR-218a MIMAT0002993 Fugu rubripes miR-218a 12 80
tni-miR-218b MIMAT0002986 Tetraodon nigroviridis miR-218b 12 80
fru-miR-218b MIMAT0002985 Fugu rubripes miR-218b 12 80
hsa-miR-520f-3p MIMAT0002830 Homo sapiens miR-520f-3p 12 80
mml-miR-218-5p MIMAT0002574 Macaca mulatta miR-218-5p 12 80
mne-miR-218 MIMAT0002573 Macaca nemestrina miR-218 12 80
lla-miR-218 MIMAT0002572 Lagothrix lagotricha miR-218 12 80
sla-miR-218 MIMAT0002571 Saguinus labiatus miR-218 12 80
ptr-miR-218 MIMAT0002570 Pan troglodytes miR-218 12 80
ppy-miR-218 MIMAT0002569 Pongo pygmaeus miR-218 12 80
lca-miR-218 MIMAT0002568 Lemur catta miR-218 12 80
ppa-miR-218 MIMAT0002567 Pan paniscus miR-218 12 80
age-miR-218 MIMAT0002566 Ateles geoffroyi miR-218 12 80
ggo-miR-218 MIMAT0002565 Gorilla gorilla miR-218 12 80
dre-miR-218b MIMAT0001869 Danio rerio miR-218b 12 80
dre-miR-218a MIMAT0001868 Danio rerio miR-218a 12 80
gga-miR-218-5p MIMAT0001144 Gallus gallus miR-218-5p 12 80
gga-miR-302a MIMAT0001143 Gallus gallus miR-302a 12 80
rno-miR-218a-5p MIMAT0000888 Rattus norvegicus miR-218a-5p 12 80
mmu-miR-218-5p MIMAT0000663 Mus musculus miR-218-5p 12 80
cbr-miR-49 MIMAT0000474 Caenorhabditis briggsae miR-49 12 80
hsa-miR-218-5p MIMAT0000275 Homo sapiens miR-218-5p 12 80
cel-miR-49-3p MIMAT0000020 Caenorhabditis elegans miR-49-3p 12 80
>tae-miR9657b-3p MIMAT0035811 Triticum aestivum miR9657b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgctt 7
|||||||
Sbjct: 1 cgtgctt 7
>tae-miR9657c-3p MIMAT0035807 Triticum aestivum miR9657c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgctt 7
|||||||
Sbjct: 1 cgtgctt 7
>ppc-miR-228-3p MIMAT0032847 Pristionchus pacificus miR-228-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgctt 7
|||||||
Sbjct: 1 cgtgctt 7
>prd-miR-1-5p MIMAT0030720 Panagrellus redivivus miR-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgctt 7
|||||||
Sbjct: 2 cgtgctt 8
>hsv2-miR-H4-3p MIMAT0010204 Herpes Simplex miR-H4-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgctt 7
|||||||
Sbjct: 2 cgtgctt 8
>tca-miR-1-5p MIMAT0019092 Tribolium castaneum miR-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgctt 7
|||||||
Sbjct: 2 cgtgctt 8
>gga-miR-1595-5p MIMAT0007458 Gallus gallus miR-1595-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgtgctt 7
|||||||
Sbjct: 7 cgtgctt 1
>bmo-miR-1a-5p MIMAT0015222 Bombyx mori miR-1a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgctt 7
|||||||
Sbjct: 2 cgtgctt 8
>ata-miR9783-3p MIMAT0037247 Aegilops tauschii miR9783-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>ssc-miR-9810-3p MIMAT0037028 Sus scrofa miR-9810-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgtgct 6
||||||
Sbjct: 8 cgtgct 3
>tae-miR9783 MIMAT0036999 Triticum aestivum miR9783
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>oha-miR-218-5p MIMAT0036836 Ophiophagus hannah miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>tch-miR-218-5p MIMAT0036514 Tupaia chinensis miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ggo-miR-519b MIMAT0036418 Gorilla gorilla miR-519b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ggo-miR-520f MIMAT0036409 Gorilla gorilla miR-520f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>chi-miR-330-3p MIMAT0036144 Capra hircus miR-330-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>chi-miR-218 MIMAT0036066 Capra hircus miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>bra-miR164e-3p MIMAT0035871 Brassica rapa miR164e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgtgct 6
||||||
Sbjct: 3 cgtgct 8
>efu-miR-218b MIMAT0035068 Eptesicus fuscus miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>efu-miR-218a MIMAT0035036 Eptesicus fuscus miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>efu-miR-9260 MIMAT0034880 Eptesicus fuscus miR-9260
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgtgct 6
||||||
Sbjct: 3 cgtgct 8
>eca-miR-9060 MIMAT0034605 Equus caballus miR-9060
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgtgct 6
||||||
Sbjct: 8 cgtgct 3
>cel-miR-8197-5p MIMAT0032807 Caenorhabditis elegans miR-8197-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 2 gtgctt 7
>ssa-miR-218-5p MIMAT0032524 Salmo salar miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>bma-miR-49 MIMAT0031751 Brugia malayi miR-49
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>stu-miR8041b-5p MIMAT0031222 Solanum tuberosum miR8041b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 1 gtgctt 6
>stu-miR8041a-5p MIMAT0031221 Solanum tuberosum miR8041a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 1 gtgctt 6
>bdi-miR7738-3p MIMAT0030213 Brachypodium distachyon miR7738-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 1 gtgctt 6
>oar-miR-218a MIMAT0030045 Ovis aries miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>lva-miR-29a-3p MIMAT0032195 Lytechinus variegatus miR-29a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>pmi-miR-29a-3p MIMAT0032145 Patiria miniata miR-29a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>cbn-miR-49 MIMAT0029745 Caenorhabditis brenneri miR-49
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>ipu-miR-218b MIMAT0029473 Ictalurus punctatus miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ipu-miR-218a MIMAT0029472 Ictalurus punctatus miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ccr-miR-218b MIMAT0026272 Cyprinus carpio miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ccr-miR-218a MIMAT0026271 Cyprinus carpio miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>mmu-miR-7026-3p MIMAT0027957 Mus musculus miR-7026-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 2 gtgctt 7
>mmu-miR-7002-3p MIMAT0027907 Mus musculus miR-7002-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>hsa-miR-6835-3p MIMAT0027571 Homo sapiens miR-6835-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>ssc-miR-218 MIMAT0025371 Sus scrofa miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>cgr-miR-218a MIMAT0023855 Cricetulus griseus miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>gma-miR2606b MIMAT0023250 Glycine max miR2606b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>gma-miR2606a MIMAT0023226 Glycine max miR2606a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>ola-miR-218b MIMAT0022609 Oryzias latipes miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ola-miR-218a MIMAT0022529 Oryzias latipes miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>cin-miR-5601-5p MIMAT0022325 Ciona intestinalis miR-5601-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>aca-miR-218-5p MIMAT0021880 Anolis carolinensis miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>asu-miR-49-3p MIMAT0021460 Ascaris suum miR-49-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>ssc-miR-218b MIMAT0020589 Sus scrofa miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>sko-miR-2006-3p MIMAT0020048 Saccoglossus kowalevskii
miR-2006-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>pma-miR-218b MIMAT0019531 Petromyzon marinus miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>pma-miR-218a-5p MIMAT0019529 Petromyzon marinus miR-218a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>hsa-miR-3977 MIMAT0019362 Homo sapiens miR-3977
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 1 gtgctt 6
>tca-miR-3888-5p MIMAT0018874 Tribolium castaneum miR-3888-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 1 gtgctt 6
>ame-miR-3773 MIMAT0018549 Apis mellifera miR-3773
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 7 gtgctt 2
>vvi-miR3628-3p MIMAT0018020 Vitis vinifera miR3628-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>vvi-miR3623-3p MIMAT0018008 Vitis vinifera miR3623-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ssc-miR-218-5p MIMAT0022961 Sus scrofa miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ppy-miR-520f MIMAT0015974 Pongo pygmaeus miR-520f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>aly-miR825-5p MIMAT0017605 Arabidopsis lyrata miR825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>tgu-miR-218-5p MIMAT0014522 Taeniopygia guttata miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>aae-miR-988-5p MIMAT0014280 Aedes aegypti miR-988-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>zma-miR164g-3p MIMAT0015319 Zea mays miR164g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgtgct 6
||||||
Sbjct: 3 cgtgct 8
>eca-miR-218 MIMAT0012928 Equus caballus miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>crm-miR-49 MIMAT0011508 Caenorhabditis remanei miR-49
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>cel-miR-2215-5p MIMAT0011445 Caenorhabditis elegans miR-2215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgtgct 6
||||||
Sbjct: 8 cgtgct 3
>spu-miR-29a MIMAT0009656 Strongylocentrotus purpuratus miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>sko-miR-33-3p MIMAT0009615 Saccoglossus kowalevskii miR-33-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>bta-miR-302a MIMAT0009278 Bos taurus miR-302a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ptr-miR-520f MIMAT0008202 Pan troglodytes miR-520f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>cfa-miR-218 MIMAT0006672 Canis familiaris miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>oan-miR-218-5p MIMAT0006815 Ornithorhynchus anatinus miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>cre-miR1168.2 MIMAT0005425 Chlamydomonas reinhardtii miR1168.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgtgct 6
||||||
Sbjct: 6 cgtgct 1
>ppt-miR1076-3p MIMAT0005207 Physcomitrella patens miR1076-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 8 gtgctt 3
>mdo-miR-218-5p MIMAT0004133 Monodelphis domestica miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>bta-miR-218 MIMAT0003798 Bos taurus miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>xtr-miR-218 MIMAT0003631 Xenopus tropicalis miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>mmu-miR-302c-3p MIMAT0003376 Mus musculus miR-302c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>osa-miR535-3p MIMAT0022927 Oryza sativa miR535-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 1 gtgctt 6
>tni-miR-218a MIMAT0002994 Tetraodon nigroviridis miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>fru-miR-218a MIMAT0002993 Fugu rubripes miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>tni-miR-218b MIMAT0002986 Tetraodon nigroviridis miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>fru-miR-218b MIMAT0002985 Fugu rubripes miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>hsa-miR-520f-3p MIMAT0002830 Homo sapiens miR-520f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>mml-miR-218-5p MIMAT0002574 Macaca mulatta miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>mne-miR-218 MIMAT0002573 Macaca nemestrina miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>lla-miR-218 MIMAT0002572 Lagothrix lagotricha miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>sla-miR-218 MIMAT0002571 Saguinus labiatus miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ptr-miR-218 MIMAT0002570 Pan troglodytes miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ppy-miR-218 MIMAT0002569 Pongo pygmaeus miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>lca-miR-218 MIMAT0002568 Lemur catta miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ppa-miR-218 MIMAT0002567 Pan paniscus miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>age-miR-218 MIMAT0002566 Ateles geoffroyi miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>ggo-miR-218 MIMAT0002565 Gorilla gorilla miR-218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>dre-miR-218b MIMAT0001869 Danio rerio miR-218b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>dre-miR-218a MIMAT0001868 Danio rerio miR-218a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>gga-miR-218-5p MIMAT0001144 Gallus gallus miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>gga-miR-302a MIMAT0001143 Gallus gallus miR-302a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>rno-miR-218a-5p MIMAT0000888 Rattus norvegicus miR-218a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>mmu-miR-218-5p MIMAT0000663 Mus musculus miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>cbr-miR-49 MIMAT0000474 Caenorhabditis briggsae miR-49
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
>hsa-miR-218-5p MIMAT0000275 Homo sapiens miR-218-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgctt 7
||||||
Sbjct: 3 gtgctt 8
>cel-miR-49-3p MIMAT0000020 Caenorhabditis elegans miR-49-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgctt 7
||||||
Sbjct: 6 gtgctt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 121
Number of extensions: 113
Number of successful extensions: 103
Number of sequences better than 100.0: 103
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 103
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
