BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s57
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9168 MIMAT0034746 Equus caballus miR-9168 14 27
hsa-miR-8064 MIMAT0030991 Homo sapiens miR-8064 14 27
lva-miR-2006-3p MIMAT0032227 Lytechinus variegatus miR-2006-3p 14 27
pmi-miR-2006-3p MIMAT0032180 Patiria miniata miR-2006-3p 14 27
oan-miR-7417-3p MIMAT0028983 Ornithorhynchus anatinus miR-7417-3p 14 27
prv-miR-LLT3 MIMAT0025306 Pseudorabies virus miR-LLT3 14 27
hvu-miR6206 MIMAT0024834 Hordeum vulgare miR6206 14 27
sko-miR-2006-3p MIMAT0020048 Saccoglossus kowalevskii miR-2006-3p 14 27
pma-miR-4568 MIMAT0019600 Petromyzon marinus miR-4568 14 27
cqu-miR-988-5p MIMAT0014362 Culex quinquefasciatus miR-988-5p 14 27
aae-miR-988-5p MIMAT0014280 Aedes aegypti miR-988-5p 14 27
spu-miR-2006 MIMAT0009747 Strongylocentrotus purpuratus miR-2006 14 27
mmu-miR-696 MIMAT0003483 Mus musculus miR-696 14 27
>eca-miR-9168 MIMAT0034746 Equus caballus miR-9168
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgtgct 8
|||||||
Sbjct: 7 gtgtgct 1
>hsa-miR-8064 MIMAT0030991 Homo sapiens miR-8064
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgtgct 8
|||||||
Sbjct: 7 gtgtgct 1
>lva-miR-2006-3p MIMAT0032227 Lytechinus variegatus miR-2006-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgtgct 8
|||||||
Sbjct: 8 gtgtgct 2
>pmi-miR-2006-3p MIMAT0032180 Patiria miniata miR-2006-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgtgct 8
|||||||
Sbjct: 8 gtgtgct 2
>oan-miR-7417-3p MIMAT0028983 Ornithorhynchus anatinus
miR-7417-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgtgct 8
|||||||
Sbjct: 2 gtgtgct 8
>prv-miR-LLT3 MIMAT0025306 Pseudorabies virus miR-LLT3
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgtgtgc 7
|||||||
Sbjct: 8 cgtgtgc 2
>hvu-miR6206 MIMAT0024834 Hordeum vulgare miR6206
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgtgtgc 7
|||||||
Sbjct: 8 cgtgtgc 2
>sko-miR-2006-3p MIMAT0020048 Saccoglossus kowalevskii
miR-2006-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgtgct 8
|||||||
Sbjct: 8 gtgtgct 2
>pma-miR-4568 MIMAT0019600 Petromyzon marinus miR-4568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgtgct 8
|||||||
Sbjct: 8 gtgtgct 2
>cqu-miR-988-5p MIMAT0014362 Culex quinquefasciatus miR-988-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgtgct 8
|||||||
Sbjct: 2 gtgtgct 8
>aae-miR-988-5p MIMAT0014280 Aedes aegypti miR-988-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgtgct 8
|||||||
Sbjct: 1 gtgtgct 7
>spu-miR-2006 MIMAT0009747 Strongylocentrotus purpuratus
miR-2006
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgtgct 8
|||||||
Sbjct: 8 gtgtgct 2
>mmu-miR-696 MIMAT0003483 Mus musculus miR-696
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgtgc 7
|||||||
Sbjct: 2 cgtgtgc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 173
Number of extensions: 160
Number of successful extensions: 141
Number of sequences better than 100.0: 13
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
