BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d14-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D14-3p MIMAT0028187 Duck enteritis miR-D14-3p 14 20
gsa-miR-76b-3p MIMAT0035335 Gyrodactylus salaris miR-76b-3p 12 80
ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p 12 80
prd-miR-7954-3p MIMAT0030795 Panagrellus redivivus miR-7954-3p 12 80
ptc-miR7812 MIMAT0030371 Populus trichocarpa miR7812 12 80
bdi-miR7764-5p MIMAT0030274 Brachypodium distachyon miR7764-5p 12 80
asu-miR-5358a-5p MIMAT0021578 Ascaris suum miR-5358a-5p 12 80
tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p 12 80
tca-miR-3802-3p MIMAT0018621 Tribolium castaneum miR-3802-3p 12 80
aly-miR4239 MIMAT0017928 Arabidopsis lyrata miR4239 12 80
bmo-miR-3257-3p MIMAT0015441 Bombyx mori miR-3257-3p 12 80
mmu-miR-669p-3p MIMAT0014890 Mus musculus miR-669p-3p 12 80
hsv2-miR-H21 MIMAT0014703 Herpes Simplex miR-H21 12 80
rlcv-miR-rL1-27-3p MIMAT0016951 Rhesus lymphocryptovirus miR-rL1... 12 80
bmo-miR-2786 MIMAT0013682 Bombyx mori miR-2786 12 80
dps-miR-2566a-3p MIMAT0012395 Drosophila pseudoobscura miR-2566a-3p 12 80
sbi-miR821b MIMAT0011386 Sorghum bicolor miR821b 12 80
ebv-miR-BART10-3p MIMAT0003420 Epstein Barr miR-BART10-3p 12 80
>dev-miR-D14-3p MIMAT0028187 Duck enteritis miR-D14-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgttatg 7
|||||||
Sbjct: 2 cgttatg 8
>gsa-miR-76b-3p MIMAT0035335 Gyrodactylus salaris miR-76b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgttat 6
||||||
Sbjct: 3 cgttat 8
>ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttatg 7
||||||
Sbjct: 1 gttatg 6
>prd-miR-7954-3p MIMAT0030795 Panagrellus redivivus miR-7954-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgttat 6
||||||
Sbjct: 8 cgttat 3
>ptc-miR7812 MIMAT0030371 Populus trichocarpa miR7812
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttatg 7
||||||
Sbjct: 3 gttatg 8
>bdi-miR7764-5p MIMAT0030274 Brachypodium distachyon miR7764-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttatg 7
||||||
Sbjct: 6 gttatg 1
>asu-miR-5358a-5p MIMAT0021578 Ascaris suum miR-5358a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttatg 7
||||||
Sbjct: 3 gttatg 8
>tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttatg 7
||||||
Sbjct: 8 gttatg 3
>tca-miR-3802-3p MIMAT0018621 Tribolium castaneum miR-3802-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgttat 6
||||||
Sbjct: 3 cgttat 8
>aly-miR4239 MIMAT0017928 Arabidopsis lyrata miR4239
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgttat 6
||||||
Sbjct: 3 cgttat 8
>bmo-miR-3257-3p MIMAT0015441 Bombyx mori miR-3257-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgttat 6
||||||
Sbjct: 3 cgttat 8
>mmu-miR-669p-3p MIMAT0014890 Mus musculus miR-669p-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttatg 7
||||||
Sbjct: 6 gttatg 1
>hsv2-miR-H21 MIMAT0014703 Herpes Simplex miR-H21
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgttat 6
||||||
Sbjct: 6 cgttat 1
>rlcv-miR-rL1-27-3p MIMAT0016951 Rhesus lymphocryptovirus
miR-rL1-27-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttatg 7
||||||
Sbjct: 8 gttatg 3
>bmo-miR-2786 MIMAT0013682 Bombyx mori miR-2786
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttatg 7
||||||
Sbjct: 3 gttatg 8
>dps-miR-2566a-3p MIMAT0012395 Drosophila pseudoobscura
miR-2566a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttatg 7
||||||
Sbjct: 8 gttatg 3
>sbi-miR821b MIMAT0011386 Sorghum bicolor miR821b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttatg 7
||||||
Sbjct: 3 gttatg 8
>ebv-miR-BART10-3p MIMAT0003420 Epstein Barr miR-BART10-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttatg 7
||||||
Sbjct: 8 gttatg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 25
Number of extensions: 24
Number of successful extensions: 18
Number of sequences better than 100.0: 18
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 18
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
