BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d9-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dev-miR-D9-5p MIMAT0028180 Duck enteritis miR-D9-5p                    16   6.9  
gra-miR8653b MIMAT0034201 Gossypium raimondii miR8653b                 14      27
str-miR-8372-5p MIMAT0033380 Strongyloides ratti miR-8372-5p           14      27
hsa-miR-5707 MIMAT0022501 Homo sapiens miR-5707                        14      27
pma-miR-4564 MIMAT0019596 Petromyzon marinus miR-4564                  14      27
bmo-miR-3421 MIMAT0015629 Bombyx mori miR-3421                         14      27
cte-miR-2709 MIMAT0013578 Capitella teleta miR-2709                    14      27
>dev-miR-D9-5p MIMAT0028180 Duck enteritis miR-D9-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 cgtttgaa 8
         ||||||||
Sbjct: 1 cgtttgaa 8
>gra-miR8653b MIMAT0034201 Gossypium raimondii miR8653b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gtttgaa 8
         |||||||
Sbjct: 7 gtttgaa 1
>str-miR-8372-5p MIMAT0033380 Strongyloides ratti miR-8372-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgtttga 7
         |||||||
Sbjct: 2 cgtttga 8
>hsa-miR-5707 MIMAT0022501 Homo sapiens miR-5707
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cgtttga 7
         |||||||
Sbjct: 2 cgtttga 8
>pma-miR-4564 MIMAT0019596 Petromyzon marinus miR-4564
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gtttgaa 8
         |||||||
Sbjct: 1 gtttgaa 7
>bmo-miR-3421 MIMAT0015629 Bombyx mori miR-3421
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtttga 7
         |||||||
Sbjct: 7 cgtttga 1
>cte-miR-2709 MIMAT0013578 Capitella teleta miR-2709
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gtttgaa 8
         |||||||
Sbjct: 2 gtttgaa 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 104
Number of extensions: 96
Number of successful extensions: 79
Number of sequences better than 100.0: 7
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)