BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d16-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D16-3p MIMAT0028189 Duck enteritis miR-D16-3p 16 6.9
ppy-miR-199b-5p MIMAT0015794 Pongo pygmaeus miR-199b-5p 16 6.9
gma-miR9758 MIMAT0036392 Glycine max miR9758 14 27
gsa-miR-124b-5p MIMAT0035292 Gyrodactylus salaris miR-124b-5p 14 27
oan-miR-7419-3p MIMAT0028987 Ornithorhynchus anatinus miR-7419-3p 14 27
mdo-miR-7386e-3p MIMAT0028853 Monodelphis domestica miR-7386e-3p 14 27
mml-miR-7168-3p MIMAT0028271 Macaca mulatta miR-7168-3p 14 27
gma-miR5035-3p MIMAT0032121 Glycine max miR5035-3p 14 27
aly-miR840-3p MIMAT0017626 Arabidopsis lyrata miR840-3p 14 27
dsi-miR-975 MIMAT0012501 Drosophila simulans miR-975 14 27
osa-miR1850.3 MIMAT0009211 Oryza sativa miR1850.3 14 27
cin-miR-124-2-5p MIMAT0015257 Ciona intestinalis miR-124-2-5p 14 27
dme-miR-975-5p MIMAT0005491 Drosophila melanogaster miR-975-5p 14 27
ath-miR840-3p MIMAT0032021 Arabidopsis thaliana miR840-3p 14 27
>dev-miR-D16-3p MIMAT0028189 Duck enteritis miR-D16-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctaaacac 8
||||||||
Sbjct: 1 ctaaacac 8
>ppy-miR-199b-5p MIMAT0015794 Pongo pygmaeus miR-199b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ctaaacac 8
||||||||
Sbjct: 8 ctaaacac 1
>gma-miR9758 MIMAT0036392 Glycine max miR9758
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaaaca 7
|||||||
Sbjct: 7 ctaaaca 1
>gsa-miR-124b-5p MIMAT0035292 Gyrodactylus salaris miR-124b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taaacac 8
|||||||
Sbjct: 7 taaacac 1
>oan-miR-7419-3p MIMAT0028987 Ornithorhynchus anatinus
miR-7419-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaaaca 7
|||||||
Sbjct: 7 ctaaaca 1
>mdo-miR-7386e-3p MIMAT0028853 Monodelphis domestica
miR-7386e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taaacac 8
|||||||
Sbjct: 2 taaacac 8
>mml-miR-7168-3p MIMAT0028271 Macaca mulatta miR-7168-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taaacac 8
|||||||
Sbjct: 8 taaacac 2
>gma-miR5035-3p MIMAT0032121 Glycine max miR5035-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaaaca 7
|||||||
Sbjct: 7 ctaaaca 1
>aly-miR840-3p MIMAT0017626 Arabidopsis lyrata miR840-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaaaca 7
|||||||
Sbjct: 8 ctaaaca 2
>dsi-miR-975 MIMAT0012501 Drosophila simulans miR-975
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taaacac 8
|||||||
Sbjct: 1 taaacac 7
>osa-miR1850.3 MIMAT0009211 Oryza sativa miR1850.3
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaaaca 7
|||||||
Sbjct: 8 ctaaaca 2
>cin-miR-124-2-5p MIMAT0015257 Ciona intestinalis miR-124-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taaacac 8
|||||||
Sbjct: 8 taaacac 2
>dme-miR-975-5p MIMAT0005491 Drosophila melanogaster miR-975-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taaacac 8
|||||||
Sbjct: 1 taaacac 7
>ath-miR840-3p MIMAT0032021 Arabidopsis thaliana miR840-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaaaca 7
|||||||
Sbjct: 8 ctaaaca 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 250
Number of extensions: 234
Number of successful extensions: 207
Number of sequences better than 100.0: 14
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
