BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sfv4-miRT124
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hme-miR-2796 MIMAT0024962 Heliconius melpomene miR-2796 14 27
mse-miR-2796 MIMAT0024461 Manduca sexta miR-2796 14 27
tur-miR-92-5p MIMAT0023086 Tetranychus urticae miR-92-5p 14 27
tca-miR-2796-3p MIMAT0018713 Tribolium castaneum miR-2796-3p 14 27
ame-miR-2796 MIMAT0018591 Apis mellifera miR-2796 14 27
ppy-miR-1295 MIMAT0016216 Pongo pygmaeus miR-1295 14 27
api-miR-2796 MIMAT0014790 Acyrthosiphon pisum miR-2796 14 27
bmo-miR-2796-3p MIMAT0013697 Bombyx mori miR-2796-3p 14 27
mtr-miR2088-5p MIMAT0010038 Medicago truncatula miR2088-5p 14 27
ptr-miR-1295 MIMAT0008014 Pan troglodytes miR-1295 14 27
hsa-miR-1295a MIMAT0005885 Homo sapiens miR-1295a 14 27
cre-miR1162-5p MIMAT0005415 Chlamydomonas reinhardtii miR1162-5p 14 27
>hme-miR-2796 MIMAT0024962 Heliconius melpomene miR-2796
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>mse-miR-2796 MIMAT0024461 Manduca sexta miR-2796
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>tur-miR-92-5p MIMAT0023086 Tetranychus urticae miR-92-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaggcc 7
|||||||
Sbjct: 8 ctaggcc 2
>tca-miR-2796-3p MIMAT0018713 Tribolium castaneum miR-2796-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>ame-miR-2796 MIMAT0018591 Apis mellifera miR-2796
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>ppy-miR-1295 MIMAT0016216 Pongo pygmaeus miR-1295
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>api-miR-2796 MIMAT0014790 Acyrthosiphon pisum miR-2796
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>bmo-miR-2796-3p MIMAT0013697 Bombyx mori miR-2796-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>mtr-miR2088-5p MIMAT0010038 Medicago truncatula miR2088-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaggcc 7
|||||||
Sbjct: 8 ctaggcc 2
>ptr-miR-1295 MIMAT0008014 Pan troglodytes miR-1295
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>hsa-miR-1295a MIMAT0005885 Homo sapiens miR-1295a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taggccg 8
|||||||
Sbjct: 2 taggccg 8
>cre-miR1162-5p MIMAT0005415 Chlamydomonas reinhardtii
miR1162-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taggccg 8
|||||||
Sbjct: 7 taggccg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 78
Number of extensions: 66
Number of successful extensions: 49
Number of sequences better than 100.0: 12
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)