BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sfv4-miRT124
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hme-miR-2796 MIMAT0024962 Heliconius melpomene miR-2796                14      27
mse-miR-2796 MIMAT0024461 Manduca sexta miR-2796                       14      27
tur-miR-92-5p MIMAT0023086 Tetranychus urticae miR-92-5p               14      27
tca-miR-2796-3p MIMAT0018713 Tribolium castaneum miR-2796-3p           14      27
ame-miR-2796 MIMAT0018591 Apis mellifera miR-2796                      14      27
ppy-miR-1295 MIMAT0016216 Pongo pygmaeus miR-1295                      14      27
api-miR-2796 MIMAT0014790 Acyrthosiphon pisum miR-2796                 14      27
bmo-miR-2796-3p MIMAT0013697 Bombyx mori miR-2796-3p                   14      27
mtr-miR2088-5p MIMAT0010038 Medicago truncatula miR2088-5p             14      27
ptr-miR-1295 MIMAT0008014 Pan troglodytes miR-1295                     14      27
hsa-miR-1295a MIMAT0005885 Homo sapiens miR-1295a                      14      27
cre-miR1162-5p MIMAT0005415 Chlamydomonas reinhardtii miR1162-5p       14      27
>hme-miR-2796 MIMAT0024962 Heliconius melpomene miR-2796
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>mse-miR-2796 MIMAT0024461 Manduca sexta miR-2796
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>tur-miR-92-5p MIMAT0023086 Tetranychus urticae miR-92-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctaggcc 7
         |||||||
Sbjct: 8 ctaggcc 2
>tca-miR-2796-3p MIMAT0018713 Tribolium castaneum miR-2796-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>ame-miR-2796 MIMAT0018591 Apis mellifera miR-2796
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>ppy-miR-1295 MIMAT0016216 Pongo pygmaeus miR-1295
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>api-miR-2796 MIMAT0014790 Acyrthosiphon pisum miR-2796
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>bmo-miR-2796-3p MIMAT0013697 Bombyx mori miR-2796-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>mtr-miR2088-5p MIMAT0010038 Medicago truncatula miR2088-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctaggcc 7
         |||||||
Sbjct: 8 ctaggcc 2
>ptr-miR-1295 MIMAT0008014 Pan troglodytes miR-1295
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>hsa-miR-1295a MIMAT0005885 Homo sapiens miR-1295a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 2 taggccg 8
>cre-miR1162-5p MIMAT0005415 Chlamydomonas reinhardtii
         miR1162-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 taggccg 8
         |||||||
Sbjct: 7 taggccg 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 78
Number of extensions: 66
Number of successful extensions: 49
Number of sequences better than 100.0: 12
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)