BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-28
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR7694-5p MIMAT0029959 Oryza sativa miR7694-5p 14 20
sme-miR-2e-5p MIMAT0011400 Schmidtea mediterranea miR-2e-5p 14 20
osa-miR1862d MIMAT0007830 Oryza sativa miR1862d 14 20
rlcv-miR-rL1-5-5p MIMAT0003432 Rhesus lymphocryptovirus miR-rL1-... 14 20
gma-miR9740 MIMAT0036360 Glycine max miR9740 12 80
chi-miR-154a-5p MIMAT0035984 Capra hircus miR-154a-5p 12 80
dvi-miR-9550-3p MIMAT0035641 Drosophila virilis miR-9550-3p 12 80
eca-miR-9147 MIMAT0034723 Equus caballus miR-9147 12 80
pxy-miR-8512 MIMAT0033737 Plutella xylostella miR-8512 12 80
str-miR-8400-3p MIMAT0033495 Strongyloides ratti miR-8400-3p 12 80
ssa-miR-221-3p MIMAT0032538 Salmo salar miR-221-3p 12 80
prd-miR-7929-5p MIMAT0030706 Panagrellus redivivus miR-7929-5p 12 80
bdi-miR7734-3p MIMAT0030203 Brachypodium distachyon miR7734-3p 12 80
mdo-miR-7396-3p MIMAT0028891 Monodelphis domestica miR-7396-3p 12 80
mdm-miR1511 MIMAT0026188 Malus domestica miR1511 12 80
hsa-miR-6802-5p MIMAT0027504 Homo sapiens miR-6802-5p 12 80
cgr-miR-331-5p MIMAT0023916 Cricetulus griseus miR-331-5p 12 80
cgr-miR-154-5p MIMAT0023786 Cricetulus griseus miR-154-5p 12 80
ath-miR5645c MIMAT0022414 Arabidopsis thaliana miR5645c 12 80
bdi-miR5069 MIMAT0020580 Brachypodium distachyon miR5069 12 80
hsa-miR-4714-3p MIMAT0019823 Homo sapiens miR-4714-3p 12 80
oar-miR-154a-5p MIMAT0019315 Ovis aries miR-154a-5p 12 80
cin-miR-4131-5p MIMAT0016726 Ciona intestinalis miR-4131-5p 12 80
cin-miR-4101-3p MIMAT0016686 Ciona intestinalis miR-4101-3p 12 80
cin-miR-4080-3p MIMAT0016650 Ciona intestinalis miR-4080-3p 12 80
sja-miR-3484-5p MIMAT0016288 Schistosoma japonicum miR-3484-5p 12 80
ppy-miR-331-5p MIMAT0015835 Pongo pygmaeus miR-331-5p 12 80
aly-miR823-3p MIMAT0017602 Arabidopsis lyrata miR823-3p 12 80
bmo-miR-3326 MIMAT0015513 Bombyx mori miR-3326 12 80
eca-miR-154a MIMAT0013129 Equus caballus miR-154a 12 80
mtr-miR2661 MIMAT0013468 Medicago truncatula miR2661 12 80
dps-miR-2571-3p MIMAT0012413 Drosophila pseudoobscura miR-2571-3p 12 80
bta-miR-154a MIMAT0009240 Bos taurus miR-154a 12 80
mml-miR-331-5p MIMAT0006272 Macaca mulatta miR-331-5p 12 80
mml-miR-154-5p MIMAT0006215 Macaca mulatta miR-154-5p 12 80
gga-miR-1816 MIMAT0007656 Gallus gallus miR-1816 12 80
gga-miR-1815 MIMAT0007512 Gallus gallus miR-1815 12 80
odi-miR-1486 MIMAT0006039 Oikopleura dioica miR-1486 12 80
oan-miR-1361-3p MIMAT0007022 Ornithorhynchus anatinus miR-1361-3p 12 80
oan-miR-1421c-5p MIMAT0006967 Ornithorhynchus anatinus miR-1421c-5p 12 80
smo-miR1095b MIMAT0005251 Selaginella moellendorffii miR1095b 12 80
smo-miR1095a MIMAT0005250 Selaginella moellendorffii miR1095a 12 80
bmo-miR-282-5p MIMAT0004205 Bombyx mori miR-282-5p 12 80
rlcv-miR-rL1-4-5p MIMAT0003430 Rhesus lymphocryptovirus miR-rL1-... 12 80
ebv-miR-BART3-5p MIMAT0003410 Epstein Barr miR-BART3-5p 12 80
ppa-miR-154 MIMAT0002300 Pan paniscus miR-154 12 80
mne-miR-154 MIMAT0002299 Macaca nemestrina miR-154 12 80
ppy-miR-154 MIMAT0002298 Pongo pygmaeus miR-154 12 80
ggo-miR-154 MIMAT0002297 Gorilla gorilla miR-154 12 80
ptr-miR-154 MIMAT0002296 Pan troglodytes miR-154 12 80
rno-miR-154-5p MIMAT0000856 Rattus norvegicus miR-154-5p 12 80
hsa-miR-331-5p MIMAT0004700 Homo sapiens miR-331-5p 12 80
mmu-miR-331-5p MIMAT0004643 Mus musculus miR-331-5p 12 80
hsa-miR-154-5p MIMAT0000452 Homo sapiens miR-154-5p 12 80
dme-miR-303-5p MIMAT0000388 Drosophila melanogaster miR-303-5p 12 80
mmu-miR-154-5p MIMAT0000164 Mus musculus miR-154-5p 12 80
mmu-miR-152-5p MIMAT0016991 Mus musculus miR-152-5p 12 80
>osa-miR7694-5p MIMAT0029959 Oryza sativa miR7694-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaggtt 7
|||||||
Sbjct: 7 ctaggtt 1
>sme-miR-2e-5p MIMAT0011400 Schmidtea mediterranea miR-2e-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaggtt 7
|||||||
Sbjct: 8 ctaggtt 2
>osa-miR1862d MIMAT0007830 Oryza sativa miR1862d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctaggtt 7
|||||||
Sbjct: 2 ctaggtt 8
>rlcv-miR-rL1-5-5p MIMAT0003432 Rhesus lymphocryptovirus
miR-rL1-5-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctaggtt 7
|||||||
Sbjct: 7 ctaggtt 1
>gma-miR9740 MIMAT0036360 Glycine max miR9740
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 3 taggtt 8
>chi-miR-154a-5p MIMAT0035984 Capra hircus miR-154a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>dvi-miR-9550-3p MIMAT0035641 Drosophila virilis miR-9550-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 1 ctaggt 6
>eca-miR-9147 MIMAT0034723 Equus caballus miR-9147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>pxy-miR-8512 MIMAT0033737 Plutella xylostella miR-8512
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 3 taggtt 8
>str-miR-8400-3p MIMAT0033495 Strongyloides ratti miR-8400-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 3 ctaggt 8
>ssa-miR-221-3p MIMAT0032538 Salmo salar miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctaggt 6
||||||
Sbjct: 6 ctaggt 1
>prd-miR-7929-5p MIMAT0030706 Panagrellus redivivus miR-7929-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 3 taggtt 8
>bdi-miR7734-3p MIMAT0030203 Brachypodium distachyon miR7734-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taggtt 7
||||||
Sbjct: 8 taggtt 3
>mdo-miR-7396-3p MIMAT0028891 Monodelphis domestica miR-7396-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctaggt 6
||||||
Sbjct: 8 ctaggt 3
>mdm-miR1511 MIMAT0026188 Malus domestica miR1511
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctaggt 6
||||||
Sbjct: 6 ctaggt 1
>hsa-miR-6802-5p MIMAT0027504 Homo sapiens miR-6802-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 1 ctaggt 6
>cgr-miR-331-5p MIMAT0023916 Cricetulus griseus miR-331-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 1 ctaggt 6
>cgr-miR-154-5p MIMAT0023786 Cricetulus griseus miR-154-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>ath-miR5645c MIMAT0022414 Arabidopsis thaliana miR5645c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taggtt 7
||||||
Sbjct: 6 taggtt 1
>bdi-miR5069 MIMAT0020580 Brachypodium distachyon miR5069
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>hsa-miR-4714-3p MIMAT0019823 Homo sapiens miR-4714-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taggtt 7
||||||
Sbjct: 8 taggtt 3
>oar-miR-154a-5p MIMAT0019315 Ovis aries miR-154a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>cin-miR-4131-5p MIMAT0016726 Ciona intestinalis miR-4131-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctaggt 6
||||||
Sbjct: 6 ctaggt 1
>cin-miR-4101-3p MIMAT0016686 Ciona intestinalis miR-4101-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>cin-miR-4080-3p MIMAT0016650 Ciona intestinalis miR-4080-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taggtt 7
||||||
Sbjct: 8 taggtt 3
>sja-miR-3484-5p MIMAT0016288 Schistosoma japonicum miR-3484-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 2 taggtt 7
>ppy-miR-331-5p MIMAT0015835 Pongo pygmaeus miR-331-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 1 ctaggt 6
>aly-miR823-3p MIMAT0017602 Arabidopsis lyrata miR823-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>bmo-miR-3326 MIMAT0015513 Bombyx mori miR-3326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>eca-miR-154a MIMAT0013129 Equus caballus miR-154a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>mtr-miR2661 MIMAT0013468 Medicago truncatula miR2661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>dps-miR-2571-3p MIMAT0012413 Drosophila pseudoobscura
miR-2571-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>bta-miR-154a MIMAT0009240 Bos taurus miR-154a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>mml-miR-331-5p MIMAT0006272 Macaca mulatta miR-331-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 1 ctaggt 6
>mml-miR-154-5p MIMAT0006215 Macaca mulatta miR-154-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>gga-miR-1816 MIMAT0007656 Gallus gallus miR-1816
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 2 taggtt 7
>gga-miR-1815 MIMAT0007512 Gallus gallus miR-1815
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>odi-miR-1486 MIMAT0006039 Oikopleura dioica miR-1486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 1 ctaggt 6
>oan-miR-1361-3p MIMAT0007022 Ornithorhynchus anatinus
miR-1361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctaggt 6
||||||
Sbjct: 8 ctaggt 3
>oan-miR-1421c-5p MIMAT0006967 Ornithorhynchus anatinus
miR-1421c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>smo-miR1095b MIMAT0005251 Selaginella moellendorffii miR1095b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>smo-miR1095a MIMAT0005250 Selaginella moellendorffii miR1095a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>bmo-miR-282-5p MIMAT0004205 Bombyx mori miR-282-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctaggt 6
||||||
Sbjct: 6 ctaggt 1
>rlcv-miR-rL1-4-5p MIMAT0003430 Rhesus lymphocryptovirus
miR-rL1-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctaggt 6
||||||
Sbjct: 6 ctaggt 1
>ebv-miR-BART3-5p MIMAT0003410 Epstein Barr miR-BART3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctaggt 6
||||||
Sbjct: 6 ctaggt 1
>ppa-miR-154 MIMAT0002300 Pan paniscus miR-154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>mne-miR-154 MIMAT0002299 Macaca nemestrina miR-154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>ppy-miR-154 MIMAT0002298 Pongo pygmaeus miR-154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>ggo-miR-154 MIMAT0002297 Gorilla gorilla miR-154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>ptr-miR-154 MIMAT0002296 Pan troglodytes miR-154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>rno-miR-154-5p MIMAT0000856 Rattus norvegicus miR-154-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>hsa-miR-331-5p MIMAT0004700 Homo sapiens miR-331-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 1 ctaggt 6
>mmu-miR-331-5p MIMAT0004643 Mus musculus miR-331-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctaggt 6
||||||
Sbjct: 1 ctaggt 6
>hsa-miR-154-5p MIMAT0000452 Homo sapiens miR-154-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>dme-miR-303-5p MIMAT0000388 Drosophila melanogaster miR-303-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 3 taggtt 8
>mmu-miR-154-5p MIMAT0000164 Mus musculus miR-154-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
>mmu-miR-152-5p MIMAT0016991 Mus musculus miR-152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taggtt 7
||||||
Sbjct: 1 taggtt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 71
Number of extensions: 67
Number of successful extensions: 57
Number of sequences better than 100.0: 57
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 57
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
