BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnpv-miR-5
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gma-miR5375 MIMAT0021616 Glycine max miR5375 14 20
hsa-miR-625-3p MIMAT0004808 Homo sapiens miR-625-3p 14 20
oha-miR-190a-3p MIMAT0036773 Ophiophagus hannah miR-190a-3p 12 80
oha-let-7e-3p MIMAT0036645 Ophiophagus hannah let-7e-3p 12 80
oha-let-7f-1-3p MIMAT0036629 Ophiophagus hannah let-7f-1-3p 12 80
oha-let-7a-2-3p MIMAT0036627 Ophiophagus hannah let-7a-2-3p 12 80
bra-miR9567-3p MIMAT0035694 Brassica rapa miR9567-3p 12 80
nve-miR-9424a MIMAT0035383 Nematostella vectensis miR-9424a 12 80
gra-miR7492m MIMAT0034133 Gossypium raimondii miR7492m 12 80
gra-miR7492l MIMAT0034132 Gossypium raimondii miR7492l 12 80
pxy-miR-8487 MIMAT0033694 Plutella xylostella miR-8487 12 80
ssa-miR-190a-3p MIMAT0032437 Salmo salar miR-190a-3p 12 80
rgl-miR7807b-5p MIMAT0032258 Rehmannia glutinosa miR7807b-5p 12 80
ghr-miR7492c MIMAT0029136 Gossypium hirsutum miR7492c 12 80
ghr-miR7492b MIMAT0029135 Gossypium hirsutum miR7492b 12 80
ghr-miR7492a MIMAT0029134 Gossypium hirsutum miR7492a 12 80
bta-miR-6122-3p MIMAT0024595 Bos taurus miR-6122-3p 12 80
aca-miR-190a-3p MIMAT0021822 Anolis carolinensis miR-190a-3p 12 80
aca-let-7e-3p MIMAT0021702 Anolis carolinensis let-7e-3p 12 80
rno-miR-3596c MIMAT0017877 Rattus norvegicus miR-3596c 12 80
tgu-miR-190-3p MIMAT0027015 Taeniopygia guttata miR-190-3p 12 80
bta-miR-2371 MIMAT0011916 Bos taurus miR-2371 12 80
sme-miR-2179-3p MIMAT0011281 Schmidtea mediterranea miR-2179-3p 12 80
oan-miR-1366 MIMAT0007030 Ornithorhynchus anatinus miR-1366 12 80
oan-miR-190a-3p MIMAT0006844 Ornithorhynchus anatinus miR-190a-3p 12 80
rno-miR-190a-3p MIMAT0017145 Rattus norvegicus miR-190a-3p 12 80
mmu-miR-190a-3p MIMAT0016998 Mus musculus miR-190a-3p 12 80
>gma-miR5375 MIMAT0021616 Glycine max miR5375
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctatagt 7
|||||||
Sbjct: 7 ctatagt 1
>hsa-miR-625-3p MIMAT0004808 Homo sapiens miR-625-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctatagt 7
|||||||
Sbjct: 8 ctatagt 2
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctatag 6
||||||
Sbjct: 3 ctatag 8
>oha-miR-190a-3p MIMAT0036773 Ophiophagus hannah miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
>oha-let-7e-3p MIMAT0036645 Ophiophagus hannah let-7e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 8 tatagt 3
>oha-let-7f-1-3p MIMAT0036629 Ophiophagus hannah let-7f-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 8 tatagt 3
>oha-let-7a-2-3p MIMAT0036627 Ophiophagus hannah let-7a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 8 tatagt 3
>bra-miR9567-3p MIMAT0035694 Brassica rapa miR9567-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 8 tatagt 3
>nve-miR-9424a MIMAT0035383 Nematostella vectensis miR-9424a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagt 7
||||||
Sbjct: 1 tatagt 6
>gra-miR7492m MIMAT0034133 Gossypium raimondii miR7492m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctatag 6
||||||
Sbjct: 1 ctatag 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctatag 6
||||||
Sbjct: 6 ctatag 1
>gra-miR7492l MIMAT0034132 Gossypium raimondii miR7492l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctatag 6
||||||
Sbjct: 1 ctatag 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctatag 6
||||||
Sbjct: 6 ctatag 1
>pxy-miR-8487 MIMAT0033694 Plutella xylostella miR-8487
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagt 7
||||||
Sbjct: 1 tatagt 6
>ssa-miR-190a-3p MIMAT0032437 Salmo salar miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
>rgl-miR7807b-5p MIMAT0032258 Rehmannia glutinosa miR7807b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 8 tatagt 3
>ghr-miR7492c MIMAT0029136 Gossypium hirsutum miR7492c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctatag 6
||||||
Sbjct: 1 ctatag 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctatag 6
||||||
Sbjct: 6 ctatag 1
>ghr-miR7492b MIMAT0029135 Gossypium hirsutum miR7492b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctatag 6
||||||
Sbjct: 1 ctatag 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctatag 6
||||||
Sbjct: 6 ctatag 1
>ghr-miR7492a MIMAT0029134 Gossypium hirsutum miR7492a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctatag 6
||||||
Sbjct: 1 ctatag 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctatag 6
||||||
Sbjct: 6 ctatag 1
>bta-miR-6122-3p MIMAT0024595 Bos taurus miR-6122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
>aca-miR-190a-3p MIMAT0021822 Anolis carolinensis miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
>aca-let-7e-3p MIMAT0021702 Anolis carolinensis let-7e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 8 tatagt 3
>rno-miR-3596c MIMAT0017877 Rattus norvegicus miR-3596c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
>tgu-miR-190-3p MIMAT0027015 Taeniopygia guttata miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
>bta-miR-2371 MIMAT0011916 Bos taurus miR-2371
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagt 7
||||||
Sbjct: 1 tatagt 6
>sme-miR-2179-3p MIMAT0011281 Schmidtea mediterranea miR-2179-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 8 tatagt 3
>oan-miR-1366 MIMAT0007030 Ornithorhynchus anatinus miR-1366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctatag 6
||||||
Sbjct: 3 ctatag 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctatag 6
||||||
Sbjct: 8 ctatag 3
>oan-miR-190a-3p MIMAT0006844 Ornithorhynchus anatinus
miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
>rno-miR-190a-3p MIMAT0017145 Rattus norvegicus miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
>mmu-miR-190a-3p MIMAT0016998 Mus musculus miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagt 7
||||||
Sbjct: 6 tatagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 46
Number of extensions: 44
Number of successful extensions: 34
Number of sequences better than 100.0: 27
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
