BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-24-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-24-5p MIMAT0016947 Rhesus lymphocryptovirus miR-rL1... 16 6.9
dvi-miR-969-3p MIMAT0035589 Drosophila virilis miR-969-3p 14 27
nve-miR-9414-5p MIMAT0035369 Nematostella vectensis miR-9414-5p 14 27
cfa-miR-508a MIMAT0034419 Canis familiaris miR-508a 14 27
sma-miR-8415-3p MIMAT0033535 Schistosoma mansoni miR-8415-3p 14 27
bdi-miR7737-3p MIMAT0030211 Brachypodium distachyon miR7737-3p 14 27
mtr-miR7696b-5p MIMAT0029988 Medicago truncatula miR7696b-5p 14 27
mtr-miR7696a-5p MIMAT0029986 Medicago truncatula miR7696a-5p 14 27
mdo-miR-7298-5p MIMAT0028584 Monodelphis domestica miR-7298-5p 14 27
ath-miR5647 MIMAT0022411 Arabidopsis thaliana miR5647 14 27
hsa-miR-4465 MIMAT0018992 Homo sapiens miR-4465 14 27
tca-miR-375-5p MIMAT0018794 Tribolium castaneum miR-375-5p 14 27
bmo-miR-3382-5p MIMAT0015575 Bombyx mori miR-3382-5p 14 27
dsi-miR-969-3p MIMAT0012480 Drosophila simulans miR-969-3p 14 27
dps-miR-969-3p MIMAT0012276 Drosophila pseudoobscura miR-969-3p 14 27
sme-miR-2163-5p MIMAT0012154 Schmidtea mediterranea miR-2163-5p 14 27
cte-miR-1996a MIMAT0009707 Capitella teleta miR-1996a 14 27
ppt-miR1069-5p MIMAT0005196 Physcomitrella patens miR1069-5p 14 27
dme-miR-969-3p MIMAT0020866 Drosophila melanogaster miR-969-3p 14 27
mmu-miR-327 MIMAT0004867 Mus musculus miR-327 14 27
ebv-miR-BART18-5p MIMAT0003717 Epstein Barr miR-BART18-5p 14 27
mmu-miR-547-5p MIMAT0017210 Mus musculus miR-547-5p 14 27
>rlcv-miR-rL1-24-5p MIMAT0016947 Rhesus lymphocryptovirus
miR-rL1-24-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcaagtt 8
||||||||
Sbjct: 1 ctcaagtt 8
>dvi-miR-969-3p MIMAT0035589 Drosophila virilis miR-969-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaagtt 8
|||||||
Sbjct: 7 tcaagtt 1
>nve-miR-9414-5p MIMAT0035369 Nematostella vectensis miR-9414-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaagtt 8
|||||||
Sbjct: 7 tcaagtt 1
>cfa-miR-508a MIMAT0034419 Canis familiaris miR-508a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcaagt 7
|||||||
Sbjct: 8 ctcaagt 2
>sma-miR-8415-3p MIMAT0033535 Schistosoma mansoni miR-8415-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaagtt 8
|||||||
Sbjct: 7 tcaagtt 1
>bdi-miR7737-3p MIMAT0030211 Brachypodium distachyon miR7737-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcaagt 7
|||||||
Sbjct: 7 ctcaagt 1
>mtr-miR7696b-5p MIMAT0029988 Medicago truncatula miR7696b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaagtt 8
|||||||
Sbjct: 1 tcaagtt 7
>mtr-miR7696a-5p MIMAT0029986 Medicago truncatula miR7696a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaagtt 8
|||||||
Sbjct: 1 tcaagtt 7
>mdo-miR-7298-5p MIMAT0028584 Monodelphis domestica miR-7298-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaagtt 8
|||||||
Sbjct: 1 tcaagtt 7
>ath-miR5647 MIMAT0022411 Arabidopsis thaliana miR5647
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaagtt 8
|||||||
Sbjct: 1 tcaagtt 7
>hsa-miR-4465 MIMAT0018992 Homo sapiens miR-4465
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcaagt 7
|||||||
Sbjct: 1 ctcaagt 7
>tca-miR-375-5p MIMAT0018794 Tribolium castaneum miR-375-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcaagt 7
|||||||
Sbjct: 7 ctcaagt 1
>bmo-miR-3382-5p MIMAT0015575 Bombyx mori miR-3382-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaagtt 8
|||||||
Sbjct: 1 tcaagtt 7
>dsi-miR-969-3p MIMAT0012480 Drosophila simulans miR-969-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaagtt 8
|||||||
Sbjct: 7 tcaagtt 1
>dps-miR-969-3p MIMAT0012276 Drosophila pseudoobscura miR-969-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaagtt 8
|||||||
Sbjct: 7 tcaagtt 1
>sme-miR-2163-5p MIMAT0012154 Schmidtea mediterranea miR-2163-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaagtt 8
|||||||
Sbjct: 8 tcaagtt 2
>cte-miR-1996a MIMAT0009707 Capitella teleta miR-1996a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcaagt 7
|||||||
Sbjct: 1 ctcaagt 7
>ppt-miR1069-5p MIMAT0005196 Physcomitrella patens miR1069-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcaagt 7
|||||||
Sbjct: 2 ctcaagt 8
>dme-miR-969-3p MIMAT0020866 Drosophila melanogaster miR-969-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaagtt 8
|||||||
Sbjct: 7 tcaagtt 1
>mmu-miR-327 MIMAT0004867 Mus musculus miR-327
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcaagt 7
|||||||
Sbjct: 7 ctcaagt 1
>ebv-miR-BART18-5p MIMAT0003717 Epstein Barr miR-BART18-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaagtt 8
|||||||
Sbjct: 1 tcaagtt 7
>mmu-miR-547-5p MIMAT0017210 Mus musculus miR-547-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcaagt 7
|||||||
Sbjct: 8 ctcaagt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 204
Number of extensions: 181
Number of successful extensions: 92
Number of sequences better than 100.0: 22
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
