BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-2-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-7448-5p MIMAT0029050 Gallus gallus miR-7448-5p 14 20
gga-miR-7445-3p MIMAT0029045 Gallus gallus miR-7445-3p 14 20
hsa-miR-6870-3p MIMAT0027641 Homo sapiens miR-6870-3p 14 20
prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2 14 20
mml-miR-1255a-5p MIMAT0024320 Macaca mulatta miR-1255a-5p 14 20
ggo-miR-1255a MIMAT0024176 Gorilla gorilla miR-1255a 14 20
dme-miR-4971-5p MIMAT0020198 Drosophila melanogaster miR-4971-5p 14 20
ppy-miR-1255b MIMAT0016181 Pongo pygmaeus miR-1255b 14 20
ppy-miR-1255a MIMAT0016180 Pongo pygmaeus miR-1255a 14 20
dps-miR-2573-3p MIMAT0012417 Drosophila pseudoobscura miR-2573-3p 14 20
ptr-miR-1255b MIMAT0007980 Pan troglodytes miR-1255b 14 20
hsa-miR-1255b-5p MIMAT0005945 Homo sapiens miR-1255b-5p 14 20
hsa-miR-1255a MIMAT0005906 Homo sapiens miR-1255a 14 20
gma-miR9760 MIMAT0036395 Glycine max miR9760 12 80
nve-miR-9461 MIMAT0035422 Nematostella vectensis miR-9461 12 80
eca-miR-8958 MIMAT0034492 Equus caballus miR-8958 12 80
gra-miR8773 MIMAT0034211 Gossypium raimondii miR8773 12 80
pxy-miR-279b-5p MIMAT0033819 Plutella xylostella miR-279b-5p 12 80
sma-miR-8467-3p MIMAT0033654 Schistosoma mansoni miR-8467-3p 12 80
ppc-miR-8312-3p MIMAT0033155 Pristionchus pacificus miR-8312-3p 12 80
bbe-miR-4891-5p MIMAT0031708 Branchiostoma belcheri miR-4891-5p 12 80
mmu-miR-8104 MIMAT0031408 Mus musculus miR-8104 12 80
stu-miR1886g-5p MIMAT0030900 Solanum tuberosum miR1886g-5p 12 80
prd-miR-37-5p MIMAT0030566 Panagrellus redivivus miR-37-5p 12 80
rgl-miR7803b-5p MIMAT0032252 Rehmannia glutinosa miR7803b-5p 12 80
cbn-miR-7690 MIMAT0029942 Caenorhabditis brenneri miR-7690 12 80
mdo-miR-7305-5p MIMAT0028604 Monodelphis domestica miR-7305-5p 12 80
mml-miR-1245-3p MIMAT0028251 Macaca mulatta miR-1245-3p 12 80
cme-miR854 MIMAT0026100 Cucumis melo miR854 12 80
mmu-miR-7093-5p MIMAT0028092 Mus musculus miR-7093-5p 12 80
mmu-miR-6960-5p MIMAT0027820 Mus musculus miR-6960-5p 12 80
hsa-miR-6891-3p MIMAT0027683 Homo sapiens miR-6891-3p 12 80
hsa-miR-6744-5p MIMAT0027389 Homo sapiens miR-6744-5p 12 80
hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p 12 80
ptc-miR6463 MIMAT0025189 Populus trichocarpa miR6463 12 80
bta-miR-6121-3p MIMAT0024593 Bos taurus miR-6121-3p 12 80
ggo-miR-3605 MIMAT0024236 Gorilla gorilla miR-3605 12 80
hsa-miR-6072 MIMAT0023697 Homo sapiens miR-6072 12 80
hco-miR-5979 MIMAT0023489 Haemonchus contortus miR-5979 12 80
aca-miR-5466 MIMAT0022099 Anolis carolinensis miR-5466 12 80
aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417 12 80
hsa-miR-5196-3p MIMAT0021129 Homo sapiens miR-5196-3p 12 80
hsa-miR-5187-5p MIMAT0021117 Homo sapiens miR-5187-5p 12 80
mmu-miR-5103 MIMAT0020610 Mus musculus miR-5103 12 80
dme-miR-4965-5p MIMAT0020188 Drosophila melanogaster miR-4965-5p 12 80
bfl-miR-4891-5p MIMAT0020480 Branchiostoma floridae miR-4891-5p 12 80
ath-miR854e MIMAT0018504 Arabidopsis thaliana miR854e 12 80
aly-miR3444b MIMAT0017920 Arabidopsis lyrata miR3444b 12 80
ppy-miR-556-5p MIMAT0016002 Pongo pygmaeus miR-556-5p 12 80
bmo-miR-3224 MIMAT0015405 Bombyx mori miR-3224 12 80
bmo-miR-279d-5p MIMAT0013606 Bombyx mori miR-279d-5p 12 80
bta-miR-2418 MIMAT0011982 Bos taurus miR-2418 12 80
crm-miR-2228 MIMAT0011625 Caenorhabditis remanei miR-2228 12 80
dvi-miR-278-5p MIMAT0032063 Drosophila virilis miR-278-5p 12 80
tca-miR-2a-5p MIMAT0019094 Tribolium castaneum miR-2a-5p 12 80
osa-miR812f MIMAT0007821 Oryza sativa miR812f 12 80
gga-miR-1740-3p MIMAT0007644 Gallus gallus miR-1740-3p 12 80
oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371 12 80
ppt-miR414 MIMAT0004357 Physcomitrella patens miR414 12 80
ath-miR854d MIMAT0004283 Arabidopsis thaliana miR854d 12 80
ath-miR854c MIMAT0004282 Arabidopsis thaliana miR854c 12 80
ath-miR854b MIMAT0004281 Arabidopsis thaliana miR854b 12 80
ath-miR854a MIMAT0004280 Arabidopsis thaliana miR854a 12 80
hsa-miR-556-5p MIMAT0003220 Homo sapiens miR-556-5p 12 80
hsa-miR-452-3p MIMAT0001636 Homo sapiens miR-452-3p 12 80
osa-miR414 MIMAT0001330 Oryza sativa miR414 12 80
dme-miR-278-5p MIMAT0020805 Drosophila melanogaster miR-278-5p 12 80
>gga-miR-7448-5p MIMAT0029050 Gallus gallus miR-7448-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcatcc 7
|||||||
Sbjct: 1 ctcatcc 7
>gga-miR-7445-3p MIMAT0029045 Gallus gallus miR-7445-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 7 ctcatcc 1
>hsa-miR-6870-3p MIMAT0027641 Homo sapiens miR-6870-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcatcc 7
|||||||
Sbjct: 2 ctcatcc 8
>prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcatcc 7
|||||||
Sbjct: 1 ctcatcc 7
>mml-miR-1255a-5p MIMAT0024320 Macaca mulatta miR-1255a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 8 ctcatcc 2
>ggo-miR-1255a MIMAT0024176 Gorilla gorilla miR-1255a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 8 ctcatcc 2
>dme-miR-4971-5p MIMAT0020198 Drosophila melanogaster
miR-4971-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 7 ctcatcc 1
>ppy-miR-1255b MIMAT0016181 Pongo pygmaeus miR-1255b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 7 ctcatcc 1
>ppy-miR-1255a MIMAT0016180 Pongo pygmaeus miR-1255a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 8 ctcatcc 2
>dps-miR-2573-3p MIMAT0012417 Drosophila pseudoobscura
miR-2573-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcatcc 7
|||||||
Sbjct: 2 ctcatcc 8
>ptr-miR-1255b MIMAT0007980 Pan troglodytes miR-1255b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 8 ctcatcc 2
>hsa-miR-1255b-5p MIMAT0005945 Homo sapiens miR-1255b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 8 ctcatcc 2
>hsa-miR-1255a MIMAT0005906 Homo sapiens miR-1255a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcatcc 7
|||||||
Sbjct: 8 ctcatcc 2
>gma-miR9760 MIMAT0036395 Glycine max miR9760
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 7 tcatcc 2
>nve-miR-9461 MIMAT0035422 Nematostella vectensis miR-9461
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>eca-miR-8958 MIMAT0034492 Equus caballus miR-8958
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 6 tcatcc 1
>gra-miR8773 MIMAT0034211 Gossypium raimondii miR8773
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>pxy-miR-279b-5p MIMAT0033819 Plutella xylostella miR-279b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>sma-miR-8467-3p MIMAT0033654 Schistosoma mansoni miR-8467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>ppc-miR-8312-3p MIMAT0033155 Pristionchus pacificus miR-8312-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>bbe-miR-4891-5p MIMAT0031708 Branchiostoma belcheri miR-4891-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 8 ctcatc 3
>mmu-miR-8104 MIMAT0031408 Mus musculus miR-8104
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>stu-miR1886g-5p MIMAT0030900 Solanum tuberosum miR1886g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 8 ctcatc 3
>prd-miR-37-5p MIMAT0030566 Panagrellus redivivus miR-37-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 6 tcatcc 1
>rgl-miR7803b-5p MIMAT0032252 Rehmannia glutinosa miR7803b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 6 tcatcc 1
>cbn-miR-7690 MIMAT0029942 Caenorhabditis brenneri miR-7690
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 3 tcatcc 8
>mdo-miR-7305-5p MIMAT0028604 Monodelphis domestica miR-7305-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>mml-miR-1245-3p MIMAT0028251 Macaca mulatta miR-1245-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>cme-miR854 MIMAT0026100 Cucumis melo miR854
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>mmu-miR-7093-5p MIMAT0028092 Mus musculus miR-7093-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>mmu-miR-6960-5p MIMAT0027820 Mus musculus miR-6960-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>hsa-miR-6891-3p MIMAT0027683 Homo sapiens miR-6891-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcatc 6
||||||
Sbjct: 3 ctcatc 8
>hsa-miR-6744-5p MIMAT0027389 Homo sapiens miR-6744-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 7 tcatcc 2
>hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>ptc-miR6463 MIMAT0025189 Populus trichocarpa miR6463
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 7 tcatcc 2
>bta-miR-6121-3p MIMAT0024593 Bos taurus miR-6121-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>ggo-miR-3605 MIMAT0024236 Gorilla gorilla miR-3605
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>hsa-miR-6072 MIMAT0023697 Homo sapiens miR-6072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcatc 6
||||||
Sbjct: 3 ctcatc 8
>hco-miR-5979 MIMAT0023489 Haemonchus contortus miR-5979
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 7 tcatcc 2
>aca-miR-5466 MIMAT0022099 Anolis carolinensis miR-5466
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 7 tcatcc 2
>aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>hsa-miR-5196-3p MIMAT0021129 Homo sapiens miR-5196-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>hsa-miR-5187-5p MIMAT0021117 Homo sapiens miR-5187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>mmu-miR-5103 MIMAT0020610 Mus musculus miR-5103
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>dme-miR-4965-5p MIMAT0020188 Drosophila melanogaster
miR-4965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 8 ctcatc 3
>bfl-miR-4891-5p MIMAT0020480 Branchiostoma floridae miR-4891-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 8 ctcatc 3
>ath-miR854e MIMAT0018504 Arabidopsis thaliana miR854e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>aly-miR3444b MIMAT0017920 Arabidopsis lyrata miR3444b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcatc 6
||||||
Sbjct: 3 ctcatc 8
>ppy-miR-556-5p MIMAT0016002 Pongo pygmaeus miR-556-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>bmo-miR-3224 MIMAT0015405 Bombyx mori miR-3224
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>bmo-miR-279d-5p MIMAT0013606 Bombyx mori miR-279d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>bta-miR-2418 MIMAT0011982 Bos taurus miR-2418
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>crm-miR-2228 MIMAT0011625 Caenorhabditis remanei miR-2228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>dvi-miR-278-5p MIMAT0032063 Drosophila virilis miR-278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>tca-miR-2a-5p MIMAT0019094 Tribolium castaneum miR-2a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcatc 6
||||||
Sbjct: 1 ctcatc 6
>osa-miR812f MIMAT0007821 Oryza sativa miR812f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
>gga-miR-1740-3p MIMAT0007644 Gallus gallus miR-1740-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 8 ctcatc 3
>ppt-miR414 MIMAT0004357 Physcomitrella patens miR414
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>ath-miR854d MIMAT0004283 Arabidopsis thaliana miR854d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>ath-miR854c MIMAT0004282 Arabidopsis thaliana miR854c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>ath-miR854b MIMAT0004281 Arabidopsis thaliana miR854b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>ath-miR854a MIMAT0004280 Arabidopsis thaliana miR854a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>hsa-miR-556-5p MIMAT0003220 Homo sapiens miR-556-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcatc 6
||||||
Sbjct: 6 ctcatc 1
>hsa-miR-452-3p MIMAT0001636 Homo sapiens miR-452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcatc 6
||||||
Sbjct: 1 ctcatc 6
>osa-miR414 MIMAT0001330 Oryza sativa miR414
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatcc 7
||||||
Sbjct: 1 tcatcc 6
>dme-miR-278-5p MIMAT0020805 Drosophila melanogaster miR-278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatcc 7
||||||
Sbjct: 8 tcatcc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 93
Number of extensions: 80
Number of successful extensions: 67
Number of sequences better than 100.0: 67
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 67
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
