BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-9-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-7111-5p MIMAT0028119 Homo sapiens miR-7111-5p 14 20
mmu-miR-7045-3p MIMAT0027995 Mus musculus miR-7045-3p 14 20
mmu-miR-6971-5p MIMAT0027844 Mus musculus miR-6971-5p 14 20
hsa-miR-6870-5p MIMAT0027640 Homo sapiens miR-6870-5p 14 20
hsa-miR-5698 MIMAT0022491 Homo sapiens miR-5698 14 20
mtr-miR5276 MIMAT0021314 Medicago truncatula miR5276 14 20
hsa-miR-4723-5p MIMAT0019838 Homo sapiens miR-4723-5p 14 20
gga-miR-1773-5p MIMAT0007683 Gallus gallus miR-1773-5p 14 20
kshv-miR-K12-12-3p MIMAT0015238 Kaposi sarcoma-associated miR-K1... 14 20
oha-miR-30b-3p MIMAT0036891 Ophiophagus hannah miR-30b-3p 12 80
chi-miR-361-3p MIMAT0036172 Capra hircus miR-361-3p 12 80
efu-miR-9290 MIMAT0034948 Eptesicus fuscus miR-9290 12 80
efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224 12 80
efu-miR-9194 MIMAT0034774 Eptesicus fuscus miR-9194 12 80
ssa-miR-30e-3-3p MIMAT0032613 Salmo salar miR-30e-3-3p 12 80
hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p 12 80
mmu-miR-8093 MIMAT0031394 Mus musculus miR-8093 12 80
lja-miR7520 MIMAT0029335 Lotus japonicus miR7520 12 80
mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p 12 80
mml-miR-7200-5p MIMAT0028364 Macaca mulatta miR-7200-5p 12 80
mml-miR-6794-5p MIMAT0028294 Macaca mulatta miR-6794-5p 12 80
mmu-miR-7119-5p MIMAT0028135 Mus musculus miR-7119-5p 12 80
mmu-miR-7073-5p MIMAT0028052 Mus musculus miR-7073-5p 12 80
mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p 12 80
mmu-miR-7024-5p MIMAT0027952 Mus musculus miR-7024-5p 12 80
mmu-miR-7023-5p MIMAT0027950 Mus musculus miR-7023-5p 12 80
mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p 12 80
mmu-miR-6941-5p MIMAT0027782 Mus musculus miR-6941-5p 12 80
hsa-miR-6889-5p MIMAT0027678 Homo sapiens miR-6889-5p 12 80
hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p 12 80
hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p 12 80
hsa-miR-6799-5p MIMAT0027498 Homo sapiens miR-6799-5p 12 80
hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p 12 80
hsa-miR-6794-5p MIMAT0027488 Homo sapiens miR-6794-5p 12 80
hsa-miR-6777-5p MIMAT0027454 Homo sapiens miR-6777-5p 12 80
hsa-miR-6763-3p MIMAT0027427 Homo sapiens miR-6763-3p 12 80
hsa-miR-6763-5p MIMAT0027426 Homo sapiens miR-6763-5p 12 80
gga-miR-6625-5p MIMAT0025721 Gallus gallus miR-6625-5p 12 80
bta-miR-6535 MIMAT0025571 Bos taurus miR-6535 12 80
mml-miR-4716 MIMAT0024337 Macaca mulatta miR-4716 12 80
hsa-miR-6090 MIMAT0023715 Homo sapiens miR-6090 12 80
mtr-miR5266 MIMAT0021275 Medicago truncatula miR5266 12 80
hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p 12 80
hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p 12 80
pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590 12 80
mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971 12 80
hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p 12 80
hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271 12 80
ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275 12 80
ppy-miR-361-3p MIMAT0015849 Pongo pygmaeus miR-361-3p 12 80
hsa-miR-3150a-3p MIMAT0015023 Homo sapiens miR-3150a-3p 12 80
eca-miR-361-3p MIMAT0013209 Equus caballus miR-361-3p 12 80
bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724 12 80
bta-miR-2394 MIMAT0011947 Bos taurus miR-2394 12 80
bta-miR-2343 MIMAT0011878 Bos taurus miR-2343 12 80
ptr-miR-920 MIMAT0008336 Pan troglodytes miR-920 12 80
ptr-miR-361 MIMAT0008115 Pan troglodytes miR-361 12 80
ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275 12 80
mmu-miR-1894-5p MIMAT0007877 Mus musculus miR-1894-5p 12 80
mml-miR-920 MIMAT0006532 Macaca mulatta miR-920 12 80
mml-miR-612 MIMAT0006464 Macaca mulatta miR-612 12 80
mml-miR-505-5p MIMAT0026892 Macaca mulatta miR-505-5p 12 80
mml-miR-361-3p MIMAT0006287 Macaca mulatta miR-361-3p 12 80
hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275 12 80
ppt-miR1039-3p MIMAT0005149 Physcomitrella patens miR1039-3p 12 80
hsa-miR-920 MIMAT0004970 Homo sapiens miR-920 12 80
mmu-miR-361-3p MIMAT0017075 Mus musculus miR-361-3p 12 80
hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p 12 80
>hsa-miR-7111-5p MIMAT0028119 Homo sapiens miR-7111-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctccccc 7
|||||||
Sbjct: 8 ctccccc 2
>mmu-miR-7045-3p MIMAT0027995 Mus musculus miR-7045-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctccccc 7
|||||||
Sbjct: 2 ctccccc 8
>mmu-miR-6971-5p MIMAT0027844 Mus musculus miR-6971-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctccccc 7
|||||||
Sbjct: 8 ctccccc 2
>hsa-miR-6870-5p MIMAT0027640 Homo sapiens miR-6870-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctccccc 7
|||||||
Sbjct: 8 ctccccc 2
>hsa-miR-5698 MIMAT0022491 Homo sapiens miR-5698
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctccccc 7
|||||||
Sbjct: 8 ctccccc 2
>mtr-miR5276 MIMAT0021314 Medicago truncatula miR5276
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctccccc 7
|||||||
Sbjct: 8 ctccccc 2
>hsa-miR-4723-5p MIMAT0019838 Homo sapiens miR-4723-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctccccc 7
|||||||
Sbjct: 8 ctccccc 2
>gga-miR-1773-5p MIMAT0007683 Gallus gallus miR-1773-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctccccc 7
|||||||
Sbjct: 8 ctccccc 2
>kshv-miR-K12-12-3p MIMAT0015238 Kaposi sarcoma-associated
miR-K12-12-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctccccc 7
|||||||
Sbjct: 8 ctccccc 2
>oha-miR-30b-3p MIMAT0036891 Ophiophagus hannah miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>chi-miR-361-3p MIMAT0036172 Capra hircus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>efu-miR-9290 MIMAT0034948 Eptesicus fuscus miR-9290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcccc 6
||||||
Sbjct: 3 ctcccc 8
>efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>efu-miR-9194 MIMAT0034774 Eptesicus fuscus miR-9194
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>ssa-miR-30e-3-3p MIMAT0032613 Salmo salar miR-30e-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>mmu-miR-8093 MIMAT0031394 Mus musculus miR-8093
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>lja-miR7520 MIMAT0029335 Lotus japonicus miR7520
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mml-miR-7200-5p MIMAT0028364 Macaca mulatta miR-7200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>mml-miR-6794-5p MIMAT0028294 Macaca mulatta miR-6794-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mmu-miR-7119-5p MIMAT0028135 Mus musculus miR-7119-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mmu-miR-7073-5p MIMAT0028052 Mus musculus miR-7073-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 7 tccccc 2
>mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>mmu-miR-7024-5p MIMAT0027952 Mus musculus miR-7024-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mmu-miR-7023-5p MIMAT0027950 Mus musculus miR-7023-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 6 ctcccc 1
>mmu-miR-6941-5p MIMAT0027782 Mus musculus miR-6941-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6889-5p MIMAT0027678 Homo sapiens miR-6889-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcccc 6
||||||
Sbjct: 1 ctcccc 6
>hsa-miR-6799-5p MIMAT0027498 Homo sapiens miR-6799-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 6 ctcccc 1
>hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6794-5p MIMAT0027488 Homo sapiens miR-6794-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6777-5p MIMAT0027454 Homo sapiens miR-6777-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>hsa-miR-6763-3p MIMAT0027427 Homo sapiens miR-6763-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcccc 6
||||||
Sbjct: 1 ctcccc 6
>hsa-miR-6763-5p MIMAT0027426 Homo sapiens miR-6763-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>gga-miR-6625-5p MIMAT0025721 Gallus gallus miR-6625-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 7 tccccc 2
>bta-miR-6535 MIMAT0025571 Bos taurus miR-6535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mml-miR-4716 MIMAT0024337 Macaca mulatta miR-4716
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>hsa-miR-6090 MIMAT0023715 Homo sapiens miR-6090
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 6 ctcccc 1
>mtr-miR5266 MIMAT0021275 Medicago truncatula miR5266
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcccc 6
||||||
Sbjct: 1 ctcccc 6
>hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 3 tccccc 8
>hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 6 tccccc 1
>ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>ppy-miR-361-3p MIMAT0015849 Pongo pygmaeus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>hsa-miR-3150a-3p MIMAT0015023 Homo sapiens miR-3150a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>eca-miR-361-3p MIMAT0013209 Equus caballus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>bta-miR-2394 MIMAT0011947 Bos taurus miR-2394
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcccc 6
||||||
Sbjct: 3 ctcccc 8
>bta-miR-2343 MIMAT0011878 Bos taurus miR-2343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>ptr-miR-920 MIMAT0008336 Pan troglodytes miR-920
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 6 ctcccc 1
>ptr-miR-361 MIMAT0008115 Pan troglodytes miR-361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>mmu-miR-1894-5p MIMAT0007877 Mus musculus miR-1894-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcccc 6
||||||
Sbjct: 3 ctcccc 8
>mml-miR-920 MIMAT0006532 Macaca mulatta miR-920
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 6 ctcccc 1
>mml-miR-612 MIMAT0006464 Macaca mulatta miR-612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 8 ctcccc 3
>mml-miR-505-5p MIMAT0026892 Macaca mulatta miR-505-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 6 ctcccc 1
>mml-miR-361-3p MIMAT0006287 Macaca mulatta miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccccc 7
||||||
Sbjct: 8 tccccc 3
>ppt-miR1039-3p MIMAT0005149 Physcomitrella patens miR1039-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 6 ctcccc 1
>hsa-miR-920 MIMAT0004970 Homo sapiens miR-920
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcccc 6
||||||
Sbjct: 6 ctcccc 1
>mmu-miR-361-3p MIMAT0017075 Mus musculus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
>hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 1 tccccc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 104
Number of extensions: 95
Number of successful extensions: 68
Number of sequences better than 100.0: 68
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
