BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d12-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prd-miR-7941-5p MIMAT0030742 Panagrellus redivivus miR-7941-5p         16   6.9  
dev-miR-D12-3p MIMAT0028185 Duck enteritis miR-D12-3p                  16   6.9  
eca-miR-9185 MIMAT0034766 Equus caballus miR-9185                      14      27
bta-miR-6530 MIMAT0025566 Bos taurus miR-6530                          14      27
dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster miR-4955-5p       14      27
ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746                      14      27
>prd-miR-7941-5p MIMAT0030742 Panagrellus redivivus miR-7941-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ctccgcgg 8
         ||||||||
Sbjct: 1 ctccgcgg 8
>dev-miR-D12-3p MIMAT0028185 Duck enteritis miR-D12-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ctccgcgg 8
         ||||||||
Sbjct: 1 ctccgcgg 8
>eca-miR-9185 MIMAT0034766 Equus caballus miR-9185
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tccgcgg 8
         |||||||
Sbjct: 2 tccgcgg 8
>bta-miR-6530 MIMAT0025566 Bos taurus miR-6530
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctccgcg 7
         |||||||
Sbjct: 7 ctccgcg 1
>dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster
         miR-4955-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctccgcg 7
         |||||||
Sbjct: 7 ctccgcg 1
>ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctccgcg 7
         |||||||
Sbjct: 7 ctccgcg 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 62
Number of extensions: 54
Number of successful extensions: 38
Number of sequences better than 100.0: 6
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)