BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rcmv-miR-orilyt-2
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

nve-miR-9458 MIMAT0035419 Nematostella vectensis miR-9458              14      20
sma-miR-8425-5p MIMAT0033554 Schistosoma mansoni miR-8425-5p           14      20
sbi-miR5564c-3p MIMAT0026391 Sorghum bicolor miR5564c-3p               14      20
pma-miR-4573 MIMAT0019606 Petromyzon marinus miR-4573                  14      20
ame-miR-9892 MIMAT0037297 Apis mellifera miR-9892                      12      80
gsa-miR-9405-5p MIMAT0035358 Gyrodactylus salaris miR-9405-5p          12      80
eca-miR-9106 MIMAT0034653 Equus caballus miR-9106                      12      80
osa-miR5077 MIMAT0020574 Oryza sativa miR5077                          12      80
gma-miR4364a MIMAT0018260 Glycine max miR4364a                         12      80
cin-miR-4153-3p MIMAT0016757 Ciona intestinalis miR-4153-3p            12      80
bmo-miR-3406-3p MIMAT0015612 Bombyx mori miR-3406-3p                   12      80
api-miR-1923 MIMAT0014131 Acyrthosiphon pisum miR-1923                 12      80
mcmv-miR-m107-1-3p MIMAT0005556 Mouse cytomegalovirus miR-m107-1-3p    12      80
>nve-miR-9458 MIMAT0035419 Nematostella vectensis miR-9458
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctcgcgt 7
         |||||||
Sbjct: 7 ctcgcgt 1
>sma-miR-8425-5p MIMAT0033554 Schistosoma mansoni miR-8425-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctcgcgt 7
         |||||||
Sbjct: 8 ctcgcgt 2
>sbi-miR5564c-3p MIMAT0026391 Sorghum bicolor miR5564c-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctcgcgt 7
         |||||||
Sbjct: 7 ctcgcgt 1
>pma-miR-4573 MIMAT0019606 Petromyzon marinus miR-4573
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ctcgcgt 7
         |||||||
Sbjct: 2 ctcgcgt 8
>ame-miR-9892 MIMAT0037297 Apis mellifera miR-9892
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tcgcgt 7
         ||||||
Sbjct: 8 tcgcgt 3
>gsa-miR-9405-5p MIMAT0035358 Gyrodactylus salaris miR-9405-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tcgcgt 7
         ||||||
Sbjct: 1 tcgcgt 6
>eca-miR-9106 MIMAT0034653 Equus caballus miR-9106
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tcgcgt 7
         ||||||
Sbjct: 8 tcgcgt 3
>osa-miR5077 MIMAT0020574 Oryza sativa miR5077
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tcgcgt 7
         ||||||
Sbjct: 3 tcgcgt 8
>gma-miR4364a MIMAT0018260 Glycine max miR4364a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ctcgcg 6
         ||||||
Sbjct: 6 ctcgcg 1
>cin-miR-4153-3p MIMAT0016757 Ciona intestinalis miR-4153-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tcgcgt 7
         ||||||
Sbjct: 2 tcgcgt 7
>bmo-miR-3406-3p MIMAT0015612 Bombyx mori miR-3406-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tcgcgt 7
         ||||||
Sbjct: 1 tcgcgt 6
>api-miR-1923 MIMAT0014131 Acyrthosiphon pisum miR-1923
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tcgcgt 7
         ||||||
Sbjct: 3 tcgcgt 8
>mcmv-miR-m107-1-3p MIMAT0005556 Mouse cytomegalovirus
         miR-m107-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ctcgcg 6
         ||||||
Sbjct: 3 ctcgcg 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 21
Number of extensions: 17
Number of successful extensions: 13
Number of sequences better than 100.0: 13
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 13
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)