BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b5
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hsv2-miR-H9-5p MIMAT0015376 Herpes Simplex miR-H9-5p                   16   6.9  
bhv1-miR-B5 MIMAT0013966 Bovine herpesvirus miR-B5                     16   6.9  
bfv-miR-BF1-5p MIMAT0035753 Bovine foamy miR-BF1-5p                    14      27
ppc-miR-8348-5p MIMAT0033244 Pristionchus pacificus miR-8348-5p        14      27
mmu-miR-3569-5p MIMAT0029854 Mus musculus miR-3569-5p                  14      27
bta-miR-3957 MIMAT0025548 Bos taurus miR-3957                          14      27
pti-miR5475 MIMAT0022108 Phaeodactylum tricornutum miR5475             14      27
oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p                    14      27
gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713                       14      27
>hsv2-miR-H9-5p MIMAT0015376 Herpes Simplex miR-H9-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ctcggagg 8
         ||||||||
Sbjct: 1 ctcggagg 8
>bhv1-miR-B5 MIMAT0013966 Bovine herpesvirus miR-B5
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ctcggagg 8
         ||||||||
Sbjct: 1 ctcggagg 8
>bfv-miR-BF1-5p MIMAT0035753 Bovine foamy miR-BF1-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcggagg 8
         |||||||
Sbjct: 2 tcggagg 8
>ppc-miR-8348-5p MIMAT0033244 Pristionchus pacificus miR-8348-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ctcggag 7
         |||||||
Sbjct: 8 ctcggag 2
>mmu-miR-3569-5p MIMAT0029854 Mus musculus miR-3569-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcggagg 8
         |||||||
Sbjct: 1 tcggagg 7
>bta-miR-3957 MIMAT0025548 Bos taurus miR-3957
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ctcggag 7
         |||||||
Sbjct: 1 ctcggag 7
>pti-miR5475 MIMAT0022108 Phaeodactylum tricornutum miR5475
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcggagg 8
         |||||||
Sbjct: 1 tcggagg 7
>oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ctcggag 7
         |||||||
Sbjct: 1 ctcggag 7
>gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ctcggag 7
         |||||||
Sbjct: 1 ctcggag 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 83
Number of extensions: 72
Number of successful extensions: 58
Number of sequences better than 100.0: 9
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)