BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h9-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H9-5p MIMAT0015376 Herpes Simplex miR-H9-5p 16 6.9
bhv1-miR-B5 MIMAT0013966 Bovine herpesvirus miR-B5 16 6.9
bfv-miR-BF1-5p MIMAT0035753 Bovine foamy miR-BF1-5p 14 27
ppc-miR-8348-5p MIMAT0033244 Pristionchus pacificus miR-8348-5p 14 27
mmu-miR-3569-5p MIMAT0029854 Mus musculus miR-3569-5p 14 27
bta-miR-3957 MIMAT0025548 Bos taurus miR-3957 14 27
pti-miR5475 MIMAT0022108 Phaeodactylum tricornutum miR5475 14 27
oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p 14 27
gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713 14 27
>hsv2-miR-H9-5p MIMAT0015376 Herpes Simplex miR-H9-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcggagg 8
||||||||
Sbjct: 1 ctcggagg 8
>bhv1-miR-B5 MIMAT0013966 Bovine herpesvirus miR-B5
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcggagg 8
||||||||
Sbjct: 1 ctcggagg 8
>bfv-miR-BF1-5p MIMAT0035753 Bovine foamy miR-BF1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcggagg 8
|||||||
Sbjct: 2 tcggagg 8
>ppc-miR-8348-5p MIMAT0033244 Pristionchus pacificus miR-8348-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcggag 7
|||||||
Sbjct: 8 ctcggag 2
>mmu-miR-3569-5p MIMAT0029854 Mus musculus miR-3569-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcggagg 8
|||||||
Sbjct: 1 tcggagg 7
>bta-miR-3957 MIMAT0025548 Bos taurus miR-3957
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcggag 7
|||||||
Sbjct: 1 ctcggag 7
>pti-miR5475 MIMAT0022108 Phaeodactylum tricornutum miR5475
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcggagg 8
|||||||
Sbjct: 1 tcggagg 7
>oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcggag 7
|||||||
Sbjct: 1 ctcggag 7
>gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcggag 7
|||||||
Sbjct: 1 ctcggag 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 83
Number of extensions: 72
Number of successful extensions: 58
Number of sequences better than 100.0: 9
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
