BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-7-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895 16 6.9
efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224 14 27
mmu-miR-7115-5p MIMAT0028127 Mus musculus miR-7115-5p 14 27
mmu-miR-6966-5p MIMAT0027834 Mus musculus miR-6966-5p 14 27
hsa-miR-6727-5p MIMAT0027355 Homo sapiens miR-6727-5p 14 27
cgr-miR-542-5p MIMAT0023983 Cricetulus griseus miR-542-5p 14 27
eca-miR-542-5p MIMAT0013237 Equus caballus miR-542-5p 14 27
rno-miR-542-5p MIMAT0003178 Rattus norvegicus miR-542-5p 14 27
mmu-miR-542-5p MIMAT0003171 Mus musculus miR-542-5p 14 27
>mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ctcggggg 8
||||||||
Sbjct: 8 ctcggggg 1
>efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcggggg 8
|||||||
Sbjct: 8 tcggggg 2
>mmu-miR-7115-5p MIMAT0028127 Mus musculus miR-7115-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcggggg 8
|||||||
Sbjct: 1 tcggggg 7
>mmu-miR-6966-5p MIMAT0027834 Mus musculus miR-6966-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcgggg 7
|||||||
Sbjct: 1 ctcgggg 7
>hsa-miR-6727-5p MIMAT0027355 Homo sapiens miR-6727-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcgggg 7
|||||||
Sbjct: 1 ctcgggg 7
>cgr-miR-542-5p MIMAT0023983 Cricetulus griseus miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcgggg 7
|||||||
Sbjct: 1 ctcgggg 7
>eca-miR-542-5p MIMAT0013237 Equus caballus miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcgggg 7
|||||||
Sbjct: 1 ctcgggg 7
>rno-miR-542-5p MIMAT0003178 Rattus norvegicus miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcgggg 7
|||||||
Sbjct: 1 ctcgggg 7
>mmu-miR-542-5p MIMAT0003171 Mus musculus miR-542-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcgggg 7
|||||||
Sbjct: 1 ctcgggg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 64
Number of extensions: 54
Number of successful extensions: 45
Number of sequences better than 100.0: 9
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
