BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR76
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-326-5p MIMAT0036137 Capra hircus miR-326-5p 14 20
bdi-miR9499 MIMAT0035508 Brachypodium distachyon miR9499 12 80
eca-miR-9096 MIMAT0034642 Equus caballus miR-9096 12 80
gra-miR8685 MIMAT0034058 Gossypium raimondii miR8685 12 80
gra-miR8669 MIMAT0034040 Gossypium raimondii miR8669 12 80
ppc-miR-8351-3p MIMAT0033255 Pristionchus pacificus miR-8351-3p 12 80
mdo-miR-7255-5p MIMAT0028476 Monodelphis domestica miR-7255-5p 12 80
hvu-miR6203 MIMAT0024831 Hordeum vulgare miR6203 12 80
hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196 12 80
pgi-miR6136a.1 MIMAT0027253 Panax ginseng miR6136a.1 12 80
ame-miR-6046 MIMAT0023669 Apis mellifera miR-6046 12 80
osa-miR5819 MIMAT0023292 Oryza sativa miR5819 12 80
cin-miR-4040-5p MIMAT0016569 Ciona intestinalis miR-4040-5p 12 80
aly-miR774a-5p.1 MIMAT0017593 Arabidopsis lyrata miR774a-5p.1 12 80
cte-miR-2717 MIMAT0013586 Capitella teleta miR-2717 12 80
bfl-miR-2075 MIMAT0010004 Branchiostoma floridae miR-2075 12 80
mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p 12 80
rno-miR-375-5p MIMAT0017301 Rattus norvegicus miR-375-5p 12 80
mmu-miR-375-5p MIMAT0017078 Mus musculus miR-375-5p 12 80
>chi-miR-326-5p MIMAT0036137 Capra hircus miR-326-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcgtct 7
|||||||
Sbjct: 2 ctcgtct 8
>bdi-miR9499 MIMAT0035508 Brachypodium distachyon miR9499
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcgtc 6
||||||
Sbjct: 3 ctcgtc 8
>eca-miR-9096 MIMAT0034642 Equus caballus miR-9096
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgtct 7
||||||
Sbjct: 1 tcgtct 6
>gra-miR8685 MIMAT0034058 Gossypium raimondii miR8685
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtct 7
||||||
Sbjct: 6 tcgtct 1
>gra-miR8669 MIMAT0034040 Gossypium raimondii miR8669
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtct 7
||||||
Sbjct: 8 tcgtct 3
>ppc-miR-8351-3p MIMAT0033255 Pristionchus pacificus miR-8351-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtct 7
||||||
Sbjct: 8 tcgtct 3
>mdo-miR-7255-5p MIMAT0028476 Monodelphis domestica miR-7255-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcgtc 6
||||||
Sbjct: 8 ctcgtc 3
>hvu-miR6203 MIMAT0024831 Hordeum vulgare miR6203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtct 7
||||||
Sbjct: 6 tcgtct 1
>hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcgtc 6
||||||
Sbjct: 8 ctcgtc 3
>pgi-miR6136a.1 MIMAT0027253 Panax ginseng miR6136a.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtct 7
||||||
Sbjct: 7 tcgtct 2
>ame-miR-6046 MIMAT0023669 Apis mellifera miR-6046
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcgtc 6
||||||
Sbjct: 8 ctcgtc 3
>osa-miR5819 MIMAT0023292 Oryza sativa miR5819
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcgtc 6
||||||
Sbjct: 8 ctcgtc 3
>cin-miR-4040-5p MIMAT0016569 Ciona intestinalis miR-4040-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgtct 7
||||||
Sbjct: 1 tcgtct 6
>aly-miR774a-5p.1 MIMAT0017593 Arabidopsis lyrata miR774a-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtct 7
||||||
Sbjct: 8 tcgtct 3
>cte-miR-2717 MIMAT0013586 Capitella teleta miR-2717
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgtct 7
||||||
Sbjct: 6 tcgtct 1
>bfl-miR-2075 MIMAT0010004 Branchiostoma floridae miR-2075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctcgtc 6
||||||
Sbjct: 3 ctcgtc 8
>mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcgtc 6
||||||
Sbjct: 8 ctcgtc 3
>rno-miR-375-5p MIMAT0017301 Rattus norvegicus miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcgtc 6
||||||
Sbjct: 8 ctcgtc 3
>mmu-miR-375-5p MIMAT0017078 Mus musculus miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctcgtc 6
||||||
Sbjct: 8 ctcgtc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 33
Number of extensions: 32
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
