BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hiv1-miR-tar-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7326-5p MIMAT0028654 Monodelphis domestica miR-7326-5p 14 20
hsa-miR-6817-3p MIMAT0027535 Homo sapiens miR-6817-3p 14 20
bmo-miR-3223-3p MIMAT0015404 Bombyx mori miR-3223-3p 14 20
hsa-miR-3191-5p MIMAT0022732 Homo sapiens miR-3191-5p 14 20
dre-miR-2196 MIMAT0011304 Danio rerio miR-2196 14 20
mmu-miR-1896 MIMAT0007873 Mus musculus miR-1896 14 20
hiv1-miR-TAR-5p MIMAT0006016 Human immunodeficiency miR-TAR-5p 14 20
mmu-miR-881-5p MIMAT0004845 Mus musculus miR-881-5p 14 20
ath-miR859 MIMAT0004303 Arabidopsis thaliana miR859 14 20
ggo-miR-518c-5p MIMAT0036421 Gorilla gorilla miR-518c-5p 12 80
gma-miR9743 MIMAT0036363 Glycine max miR9743 12 80
chi-miR-330-5p MIMAT0036143 Capra hircus miR-330-5p 12 80
efu-miR-9220 MIMAT0034812 Eptesicus fuscus miR-9220 12 80
eca-miR-9055 MIMAT0034599 Equus caballus miR-9055 12 80
gra-miR1446 MIMAT0034042 Gossypium raimondii miR1446 12 80
ppc-miR-8364s-3p MIMAT0033271 Pristionchus pacificus miR-8364s-3p 12 80
ppc-miR-8364l-3p MIMAT0033265 Pristionchus pacificus miR-8364l-3p 12 80
ppc-miR-8364e-3p MIMAT0033261 Pristionchus pacificus miR-8364e-3p 12 80
ppc-miR-8364i-3p MIMAT0033217 Pristionchus pacificus miR-8364i-3p 12 80
ppc-miR-8364a-3p MIMAT0033177 Pristionchus pacificus miR-8364a-3p 12 80
ppc-miR-8364p-3p MIMAT0033160 Pristionchus pacificus miR-8364p-3p 12 80
ppc-miR-8364o-3p MIMAT0033139 Pristionchus pacificus miR-8364o-3p 12 80
ppc-miR-8364g-3p MIMAT0033120 Pristionchus pacificus miR-8364g-3p 12 80
ppc-miR-8364b-3p MIMAT0033082 Pristionchus pacificus miR-8364b-3p 12 80
ppc-miR-8364h-3p MIMAT0033064 Pristionchus pacificus miR-8364h-3p 12 80
ppc-miR-8250a-5p MIMAT0032964 Pristionchus pacificus miR-8250a-5p 12 80
ath-miR8166 MIMAT0032762 Arabidopsis thaliana miR8166 12 80
oan-miR-7407-3p MIMAT0028961 Ornithorhynchus anatinus miR-7407-3p 12 80
mml-miR-7205-3p MIMAT0028377 Macaca mulatta miR-7205-3p 12 80
ssc-miR-7135-5p MIMAT0028145 Sus scrofa miR-7135-5p 12 80
mmu-miR-7063-3p MIMAT0028031 Mus musculus miR-7063-3p 12 80
mmu-miR-7021-3p MIMAT0027947 Mus musculus miR-7021-3p 12 80
mmu-miR-6973b-3p MIMAT0027909 Mus musculus miR-6973b-3p 12 80
mmu-miR-6952-3p MIMAT0027805 Mus musculus miR-6952-3p 12 80
hsa-miR-6873-3p MIMAT0027647 Homo sapiens miR-6873-3p 12 80
hsa-miR-6769b-3p MIMAT0027621 Homo sapiens miR-6769b-3p 12 80
hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p 12 80
hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p 12 80
hsa-miR-6728-3p MIMAT0027358 Homo sapiens miR-6728-3p 12 80
gga-miR-6675-3p MIMAT0025778 Gallus gallus miR-6675-3p 12 80
gga-miR-6582-5p MIMAT0025671 Gallus gallus miR-6582-5p 12 80
dme-miR-4974-5p MIMAT0020203 Drosophila melanogaster miR-4974-5p 12 80
dme-miR-4963-3p MIMAT0020186 Drosophila melanogaster miR-4963-3p 12 80
hsa-miR-4723-3p MIMAT0019839 Homo sapiens miR-4723-3p 12 80
hsa-miR-4684-5p MIMAT0019769 Homo sapiens miR-4684-5p 12 80
hsa-miR-4653-5p MIMAT0019718 Homo sapiens miR-4653-5p 12 80
pma-miR-4560 MIMAT0019592 Petromyzon marinus miR-4560 12 80
gma-miR4340 MIMAT0018228 Glycine max miR4340 12 80
hsa-miR-3921 MIMAT0018196 Homo sapiens miR-3921 12 80
tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p 12 80
sja-miR-3486-5p MIMAT0016292 Schistosoma japonicum miR-3486-5p 12 80
ppy-miR-593 MIMAT0016036 Pongo pygmaeus miR-593 12 80
ppy-miR-330-5p MIMAT0015833 Pongo pygmaeus miR-330-5p 12 80
bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239 12 80
hsa-miR-3183 MIMAT0015063 Homo sapiens miR-3183 12 80
hsa-miR-3123 MIMAT0014985 Homo sapiens miR-3123 12 80
eca-miR-330 MIMAT0013012 Equus caballus miR-330 12 80
mtr-miR2663 MIMAT0013470 Medicago truncatula miR2663 12 80
bta-miR-1584-3p MIMAT0011970 Bos taurus miR-1584-3p 12 80
bta-miR-2364 MIMAT0011902 Bos taurus miR-2364 12 80
cfa-miR-330 MIMAT0009893 Canis familiaris miR-330 12 80
hsv1-miR-H5-3p MIMAT0008403 Herpes Simplex miR-H5-3p 12 80
ptr-miR-593 MIMAT0008264 Pan troglodytes miR-593 12 80
mml-miR-942-5p MIMAT0006542 Macaca mulatta miR-942-5p 12 80
mml-miR-593 MIMAT0006453 Macaca mulatta miR-593 12 80
mml-miR-330-5p MIMAT0006270 Macaca mulatta miR-330-5p 12 80
gga-miR-1689-5p MIMAT0007579 Gallus gallus miR-1689-5p 12 80
gga-miR-1647 MIMAT0007523 Gallus gallus miR-1647 12 80
hiv1-miR-TAR-3p MIMAT0006017 Human immunodeficiency miR-TAR-3p 12 80
cel-miR-1018 MIMAT0005031 Caenorhabditis elegans miR-1018 12 80
hsa-miR-593-3p MIMAT0004802 Homo sapiens miR-593-3p 12 80
hsa-miR-518c-5p MIMAT0002847 Homo sapiens miR-518c-5p 12 80
zma-miR156j-3p MIMAT0015175 Zea mays miR156j-3p 12 80
hsa-miR-330-5p MIMAT0004693 Homo sapiens miR-330-5p 12 80
mmu-miR-330-5p MIMAT0004642 Mus musculus miR-330-5p 12 80
rno-miR-330-5p MIMAT0004641 Rattus norvegicus miR-330-5p 12 80
dme-miR-281-1-5p MIMAT0000344 Drosophila melanogaster miR-281-1-5p 12 80
>mdo-miR-7326-5p MIMAT0028654 Monodelphis domestica miR-7326-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctctctg 7
|||||||
Sbjct: 8 ctctctg 2
>hsa-miR-6817-3p MIMAT0027535 Homo sapiens miR-6817-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctctg 7
|||||||
Sbjct: 2 ctctctg 8
>bmo-miR-3223-3p MIMAT0015404 Bombyx mori miR-3223-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctctg 7
|||||||
Sbjct: 1 ctctctg 7
>hsa-miR-3191-5p MIMAT0022732 Homo sapiens miR-3191-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctctg 7
|||||||
Sbjct: 1 ctctctg 7
>dre-miR-2196 MIMAT0011304 Danio rerio miR-2196
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctctg 7
|||||||
Sbjct: 2 ctctctg 8
>mmu-miR-1896 MIMAT0007873 Mus musculus miR-1896
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctctg 7
|||||||
Sbjct: 1 ctctctg 7
>hiv1-miR-TAR-5p MIMAT0006016 Human immunodeficiency miR-TAR-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctctg 7
|||||||
Sbjct: 2 ctctctg 8
>mmu-miR-881-5p MIMAT0004845 Mus musculus miR-881-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctctctg 7
|||||||
Sbjct: 7 ctctctg 1
>ath-miR859 MIMAT0004303 Arabidopsis thaliana miR859
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctctg 7
|||||||
Sbjct: 2 ctctctg 8
>ggo-miR-518c-5p MIMAT0036421 Gorilla gorilla miR-518c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>gma-miR9743 MIMAT0036363 Glycine max miR9743
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>chi-miR-330-5p MIMAT0036143 Capra hircus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>efu-miR-9220 MIMAT0034812 Eptesicus fuscus miR-9220
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>eca-miR-9055 MIMAT0034599 Equus caballus miR-9055
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>gra-miR1446 MIMAT0034042 Gossypium raimondii miR1446
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 3 ctctct 8
>ppc-miR-8364s-3p MIMAT0033271 Pristionchus pacificus
miR-8364s-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>ppc-miR-8364l-3p MIMAT0033265 Pristionchus pacificus
miR-8364l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>ppc-miR-8364e-3p MIMAT0033261 Pristionchus pacificus
miR-8364e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>ppc-miR-8364i-3p MIMAT0033217 Pristionchus pacificus
miR-8364i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>ppc-miR-8364a-3p MIMAT0033177 Pristionchus pacificus
miR-8364a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>ppc-miR-8364p-3p MIMAT0033160 Pristionchus pacificus
miR-8364p-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 8 ctctct 3
>ppc-miR-8364o-3p MIMAT0033139 Pristionchus pacificus
miR-8364o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 8 ctctct 3
>ppc-miR-8364g-3p MIMAT0033120 Pristionchus pacificus
miR-8364g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>ppc-miR-8364b-3p MIMAT0033082 Pristionchus pacificus
miR-8364b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>ppc-miR-8364h-3p MIMAT0033064 Pristionchus pacificus
miR-8364h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>ppc-miR-8250a-5p MIMAT0032964 Pristionchus pacificus
miR-8250a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 1 ctctct 6
>ath-miR8166 MIMAT0032762 Arabidopsis thaliana miR8166
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>oan-miR-7407-3p MIMAT0028961 Ornithorhynchus anatinus
miR-7407-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 3 tctctg 8
>mml-miR-7205-3p MIMAT0028377 Macaca mulatta miR-7205-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>ssc-miR-7135-5p MIMAT0028145 Sus scrofa miR-7135-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>mmu-miR-7063-3p MIMAT0028031 Mus musculus miR-7063-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 3 ctctct 8
>mmu-miR-7021-3p MIMAT0027947 Mus musculus miR-7021-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>mmu-miR-6973b-3p MIMAT0027909 Mus musculus miR-6973b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 3 ctctct 8
>mmu-miR-6952-3p MIMAT0027805 Mus musculus miR-6952-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>hsa-miR-6873-3p MIMAT0027647 Homo sapiens miR-6873-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 3 ctctct 8
>hsa-miR-6769b-3p MIMAT0027621 Homo sapiens miR-6769b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 3 ctctct 8
>hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>hsa-miR-6728-3p MIMAT0027358 Homo sapiens miR-6728-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>gga-miR-6675-3p MIMAT0025778 Gallus gallus miR-6675-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>gga-miR-6582-5p MIMAT0025671 Gallus gallus miR-6582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 8 ctctct 3
>dme-miR-4974-5p MIMAT0020203 Drosophila melanogaster
miR-4974-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>dme-miR-4963-3p MIMAT0020186 Drosophila melanogaster
miR-4963-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 3 tctctg 8
>hsa-miR-4723-3p MIMAT0019839 Homo sapiens miR-4723-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 3 ctctct 8
>hsa-miR-4684-5p MIMAT0019769 Homo sapiens miR-4684-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 1 ctctct 6
>hsa-miR-4653-5p MIMAT0019718 Homo sapiens miR-4653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>pma-miR-4560 MIMAT0019592 Petromyzon marinus miR-4560
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>gma-miR4340 MIMAT0018228 Glycine max miR4340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctg 7
||||||
Sbjct: 8 tctctg 3
>hsa-miR-3921 MIMAT0018196 Homo sapiens miR-3921
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>sja-miR-3486-5p MIMAT0016292 Schistosoma japonicum miR-3486-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>ppy-miR-593 MIMAT0016036 Pongo pygmaeus miR-593
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 3 tctctg 8
>ppy-miR-330-5p MIMAT0015833 Pongo pygmaeus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctg 7
||||||
Sbjct: 7 tctctg 2
>hsa-miR-3183 MIMAT0015063 Homo sapiens miR-3183
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 3 ctctct 8
>hsa-miR-3123 MIMAT0014985 Homo sapiens miR-3123
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctg 7
||||||
Sbjct: 6 tctctg 1
>eca-miR-330 MIMAT0013012 Equus caballus miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>mtr-miR2663 MIMAT0013470 Medicago truncatula miR2663
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 8 ctctct 3
>bta-miR-1584-3p MIMAT0011970 Bos taurus miR-1584-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 1 ctctct 6
>bta-miR-2364 MIMAT0011902 Bos taurus miR-2364
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>cfa-miR-330 MIMAT0009893 Canis familiaris miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>hsv1-miR-H5-3p MIMAT0008403 Herpes Simplex miR-H5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctctg 7
||||||
Sbjct: 8 tctctg 3
>ptr-miR-593 MIMAT0008264 Pan troglodytes miR-593
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 3 tctctg 8
>mml-miR-942-5p MIMAT0006542 Macaca mulatta miR-942-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 3 tctctg 8
>mml-miR-593 MIMAT0006453 Macaca mulatta miR-593
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 3 tctctg 8
>mml-miR-330-5p MIMAT0006270 Macaca mulatta miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>gga-miR-1689-5p MIMAT0007579 Gallus gallus miR-1689-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>gga-miR-1647 MIMAT0007523 Gallus gallus miR-1647
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>hiv1-miR-TAR-3p MIMAT0006017 Human immunodeficiency miR-TAR-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>cel-miR-1018 MIMAT0005031 Caenorhabditis elegans miR-1018
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 6 ctctct 1
>hsa-miR-593-3p MIMAT0004802 Homo sapiens miR-593-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 3 tctctg 8
>hsa-miR-518c-5p MIMAT0002847 Homo sapiens miR-518c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>zma-miR156j-3p MIMAT0015175 Zea mays miR156j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctct 6
||||||
Sbjct: 3 ctctct 8
>hsa-miR-330-5p MIMAT0004693 Homo sapiens miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>mmu-miR-330-5p MIMAT0004642 Mus musculus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>rno-miR-330-5p MIMAT0004641 Rattus norvegicus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctctg 7
||||||
Sbjct: 1 tctctg 6
>dme-miR-281-1-5p MIMAT0000344 Drosophila melanogaster
miR-281-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctct 6
||||||
Sbjct: 8 ctctct 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 146
Number of extensions: 137
Number of successful extensions: 77
Number of sequences better than 100.0: 77
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 77
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
