BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hiv1-miR-tar-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9220 MIMAT0034812 Eptesicus fuscus miR-9220 14 20
eca-miR-8984 MIMAT0034521 Equus caballus miR-8984 14 20
tcc-miR399f MIMAT0020440 Theobroma cacao miR399f 14 20
hiv1-miR-TAR-3p MIMAT0006017 Human immunodeficiency miR-TAR-3p 14 20
oha-miR-181b-3p MIMAT0036763 Ophiophagus hannah miR-181b-3p 12 80
ggo-miR-525-5p MIMAT0036412 Gorilla gorilla miR-525-5p 12 80
tae-miR9678-3p MIMAT0035805 Triticum aestivum miR9678-3p 12 80
rno-miR-149-5p MIMAT0035726 Rattus norvegicus miR-149-5p 12 80
efu-miR-149 MIMAT0035021 Eptesicus fuscus miR-149 12 80
eca-miR-9015 MIMAT0034556 Equus caballus miR-9015 12 80
eca-miR-8927 MIMAT0034455 Equus caballus miR-8927 12 80
cfa-miR-8847 MIMAT0034342 Canis familiaris miR-8847 12 80
pxy-miR-2525-3p MIMAT0033810 Plutella xylostella miR-2525-3p 12 80
mmu-miR-7688-3p MIMAT0029907 Mus musculus miR-7688-3p 12 80
mmu-miR-7652-3p MIMAT0029811 Mus musculus miR-7652-3p 12 80
hcmv-miR-UL69 MIMAT0029123 Human cytomegalovirus miR-UL69 12 80
mdo-miR-7362-3p MIMAT0028737 Monodelphis domestica miR-7362-3p 12 80
mdo-miR-7290-5p MIMAT0028562 Monodelphis domestica miR-7290-5p 12 80
bma-miR-5863 MIMAT0026362 Brugia malayi miR-5863 12 80
gga-miR-6647-5p MIMAT0025744 Gallus gallus miR-6647-5p 12 80
gga-miR-6582-3p MIMAT0025672 Gallus gallus miR-6582-3p 12 80
hsa-miR-6504-5p MIMAT0025464 Homo sapiens miR-6504-5p 12 80
hsa-miR-6501-3p MIMAT0025459 Homo sapiens miR-6501-3p 12 80
ptc-miR6428 MIMAT0025229 Populus trichocarpa miR6428 12 80
mmu-miR-6392-5p MIMAT0025141 Mus musculus miR-6392-5p 12 80
hvu-miR6185 MIMAT0024809 Hordeum vulgare miR6185 12 80
bta-miR-149-5p MIMAT0024570 Bos taurus miR-149-5p 12 80
ggo-miR-149 MIMAT0024144 Gorilla gorilla miR-149 12 80
cgr-miR-149-5p MIMAT0023780 Cricetulus griseus miR-149-5p 12 80
mmu-miR-5623-3p MIMAT0022374 Mus musculus miR-5623-3p 12 80
osa-miR5514 MIMAT0022148 Oryza sativa miR5514 12 80
aca-miR-5427 MIMAT0022048 Anolis carolinensis miR-5427 12 80
asu-miR-5349-3p MIMAT0021551 Ascaris suum miR-5349-3p 12 80
mtr-miR5268b MIMAT0021292 Medicago truncatula miR5268b 12 80
mtr-miR5268a MIMAT0021291 Medicago truncatula miR5268a 12 80
bfl-miR-4864-3p MIMAT0020098 Branchiostoma floridae miR-4864-3p 12 80
hsa-miR-4794 MIMAT0019967 Homo sapiens miR-4794 12 80
hsa-miR-4756-3p MIMAT0019900 Homo sapiens miR-4756-3p 12 80
hsa-miR-3064-5p MIMAT0019864 Homo sapiens miR-3064-5p 12 80
pma-miR-497-3p MIMAT0019557 Petromyzon marinus miR-497-3p 12 80
ssc-miR-149 MIMAT0018379 Sus scrofa miR-149 12 80
hsa-miR-3922-3p MIMAT0018197 Homo sapiens miR-3922-3p 12 80
hsa-miR-4257 MIMAT0016878 Homo sapiens miR-4257 12 80
hsa-miR-4314 MIMAT0016868 Homo sapiens miR-4314 12 80
rno-miR-3085 MIMAT0017805 Rattus norvegicus miR-3085 12 80
ppy-miR-525-5p MIMAT0015982 Pongo pygmaeus miR-525-5p 12 80
ppy-miR-520c-5p MIMAT0015969 Pongo pygmaeus miR-520c-5p 12 80
ppy-miR-520a-5p MIMAT0015966 Pongo pygmaeus miR-520a-5p 12 80
ppy-miR-518d-5p MIMAT0015955 Pongo pygmaeus miR-518d-5p 12 80
ppy-miR-149 MIMAT0015773 Pongo pygmaeus miR-149 12 80
bmo-miR-3223-3p MIMAT0015404 Bombyx mori miR-3223-3p 12 80
hsa-miR-3191-5p MIMAT0022732 Homo sapiens miR-3191-5p 12 80
hsa-miR-3190-5p MIMAT0015073 Homo sapiens miR-3190-5p 12 80
hsa-miR-3128 MIMAT0014991 Homo sapiens miR-3128 12 80
hsa-miR-3126-3p MIMAT0015377 Homo sapiens miR-3126-3p 12 80
mmu-miR-3085-3p MIMAT0014879 Mus musculus miR-3085-3p 12 80
mmu-miR-3064-5p MIMAT0014834 Mus musculus miR-3064-5p 12 80
osa-miR2879 MIMAT0013831 Oryza sativa miR2879 12 80
eca-miR-149 MIMAT0012973 Equus caballus miR-149 12 80
bta-miR-2464-3p MIMAT0012052 Bos taurus miR-2464-3p 12 80
bta-miR-2459 MIMAT0012044 Bos taurus miR-2459 12 80
bta-miR-2439-5p MIMAT0012013 Bos taurus miR-2439-5p 12 80
bta-miR-2290 MIMAT0011798 Bos taurus miR-2290 12 80
cel-miR-2218a-3p MIMAT0011456 Caenorhabditis elegans miR-2218a-3p 12 80
cfa-miR-149 MIMAT0009884 Canis familiaris miR-149 12 80
nve-miR-2045-5p MIMAT0009814 Nematostella vectensis miR-2045-5p 12 80
ptr-miR-149 MIMAT0008043 Pan troglodytes miR-149 12 80
mml-miR-525 MIMAT0006402 Macaca mulatta miR-525 12 80
mml-miR-149-5p MIMAT0006210 Macaca mulatta miR-149-5p 12 80
gga-miR-1794 MIMAT0007708 Gallus gallus miR-1794 12 80
gga-miR-1699 MIMAT0007591 Gallus gallus miR-1699 12 80
mml-miR-514a-5p MIMAT0026748 Macaca mulatta miR-514a-5p 12 80
hsa-miR-514a-5p MIMAT0022702 Homo sapiens miR-514a-5p 12 80
hsa-miR-525-5p MIMAT0002838 Homo sapiens miR-525-5p 12 80
hsa-miR-520a-5p MIMAT0002833 Homo sapiens miR-520a-5p 12 80
hsa-miR-149-5p MIMAT0000450 Homo sapiens miR-149-5p 12 80
mmu-miR-149-5p MIMAT0000159 Mus musculus miR-149-5p 12 80
>efu-miR-9220 MIMAT0034812 Eptesicus fuscus miR-9220
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctggc 7
|||||||
Sbjct: 2 ctctggc 8
>eca-miR-8984 MIMAT0034521 Equus caballus miR-8984
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctggc 7
|||||||
Sbjct: 1 ctctggc 7
>tcc-miR399f MIMAT0020440 Theobroma cacao miR399f
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctctggc 7
|||||||
Sbjct: 8 ctctggc 2
>hiv1-miR-TAR-3p MIMAT0006017 Human immunodeficiency miR-TAR-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctctggc 7
|||||||
Sbjct: 2 ctctggc 8
>oha-miR-181b-3p MIMAT0036763 Ophiophagus hannah miR-181b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 3 ctctgg 8
>ggo-miR-525-5p MIMAT0036412 Gorilla gorilla miR-525-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>tae-miR9678-3p MIMAT0035805 Triticum aestivum miR9678-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>rno-miR-149-5p MIMAT0035726 Rattus norvegicus miR-149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>efu-miR-149 MIMAT0035021 Eptesicus fuscus miR-149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>eca-miR-9015 MIMAT0034556 Equus caballus miR-9015
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>eca-miR-8927 MIMAT0034455 Equus caballus miR-8927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>cfa-miR-8847 MIMAT0034342 Canis familiaris miR-8847
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>pxy-miR-2525-3p MIMAT0033810 Plutella xylostella miR-2525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>mmu-miR-7688-3p MIMAT0029907 Mus musculus miR-7688-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>mmu-miR-7652-3p MIMAT0029811 Mus musculus miR-7652-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>hcmv-miR-UL69 MIMAT0029123 Human cytomegalovirus miR-UL69
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>mdo-miR-7362-3p MIMAT0028737 Monodelphis domestica miR-7362-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>mdo-miR-7290-5p MIMAT0028562 Monodelphis domestica miR-7290-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>bma-miR-5863 MIMAT0026362 Brugia malayi miR-5863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctggc 7
||||||
Sbjct: 6 tctggc 1
>gga-miR-6647-5p MIMAT0025744 Gallus gallus miR-6647-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 3 ctctgg 8
>gga-miR-6582-3p MIMAT0025672 Gallus gallus miR-6582-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 3 ctctgg 8
>hsa-miR-6504-5p MIMAT0025464 Homo sapiens miR-6504-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>hsa-miR-6501-3p MIMAT0025459 Homo sapiens miR-6501-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>ptc-miR6428 MIMAT0025229 Populus trichocarpa miR6428
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>mmu-miR-6392-5p MIMAT0025141 Mus musculus miR-6392-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>hvu-miR6185 MIMAT0024809 Hordeum vulgare miR6185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>bta-miR-149-5p MIMAT0024570 Bos taurus miR-149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>ggo-miR-149 MIMAT0024144 Gorilla gorilla miR-149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>cgr-miR-149-5p MIMAT0023780 Cricetulus griseus miR-149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>mmu-miR-5623-3p MIMAT0022374 Mus musculus miR-5623-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 3 tctggc 8
>osa-miR5514 MIMAT0022148 Oryza sativa miR5514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>aca-miR-5427 MIMAT0022048 Anolis carolinensis miR-5427
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 3 tctggc 8
>asu-miR-5349-3p MIMAT0021551 Ascaris suum miR-5349-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>mtr-miR5268b MIMAT0021292 Medicago truncatula miR5268b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>mtr-miR5268a MIMAT0021291 Medicago truncatula miR5268a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>bfl-miR-4864-3p MIMAT0020098 Branchiostoma floridae miR-4864-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctggc 7
||||||
Sbjct: 8 tctggc 3
>hsa-miR-4794 MIMAT0019967 Homo sapiens miR-4794
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>hsa-miR-4756-3p MIMAT0019900 Homo sapiens miR-4756-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>hsa-miR-3064-5p MIMAT0019864 Homo sapiens miR-3064-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>pma-miR-497-3p MIMAT0019557 Petromyzon marinus miR-497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>ssc-miR-149 MIMAT0018379 Sus scrofa miR-149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>hsa-miR-3922-3p MIMAT0018197 Homo sapiens miR-3922-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>hsa-miR-4257 MIMAT0016878 Homo sapiens miR-4257
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>hsa-miR-4314 MIMAT0016868 Homo sapiens miR-4314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 1 ctctgg 6
>rno-miR-3085 MIMAT0017805 Rattus norvegicus miR-3085
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>ppy-miR-525-5p MIMAT0015982 Pongo pygmaeus miR-525-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>ppy-miR-520c-5p MIMAT0015969 Pongo pygmaeus miR-520c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 1 ctctgg 6
>ppy-miR-520a-5p MIMAT0015966 Pongo pygmaeus miR-520a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>ppy-miR-518d-5p MIMAT0015955 Pongo pygmaeus miR-518d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 1 ctctgg 6
>ppy-miR-149 MIMAT0015773 Pongo pygmaeus miR-149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>bmo-miR-3223-3p MIMAT0015404 Bombyx mori miR-3223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 3 ctctgg 8
>hsa-miR-3191-5p MIMAT0022732 Homo sapiens miR-3191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 3 ctctgg 8
>hsa-miR-3190-5p MIMAT0015073 Homo sapiens miR-3190-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>hsa-miR-3128 MIMAT0014991 Homo sapiens miR-3128
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>hsa-miR-3126-3p MIMAT0015377 Homo sapiens miR-3126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 3 tctggc 8
>mmu-miR-3085-3p MIMAT0014879 Mus musculus miR-3085-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>mmu-miR-3064-5p MIMAT0014834 Mus musculus miR-3064-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>osa-miR2879 MIMAT0013831 Oryza sativa miR2879
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctggc 7
||||||
Sbjct: 6 tctggc 1
>eca-miR-149 MIMAT0012973 Equus caballus miR-149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>bta-miR-2464-3p MIMAT0012052 Bos taurus miR-2464-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>bta-miR-2459 MIMAT0012044 Bos taurus miR-2459
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctggc 7
||||||
Sbjct: 6 tctggc 1
>bta-miR-2439-5p MIMAT0012013 Bos taurus miR-2439-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>bta-miR-2290 MIMAT0011798 Bos taurus miR-2290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 3 ctctgg 8
>cel-miR-2218a-3p MIMAT0011456 Caenorhabditis elegans
miR-2218a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctggc 7
||||||
Sbjct: 8 tctggc 3
>cfa-miR-149 MIMAT0009884 Canis familiaris miR-149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>nve-miR-2045-5p MIMAT0009814 Nematostella vectensis miR-2045-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>ptr-miR-149 MIMAT0008043 Pan troglodytes miR-149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>mml-miR-525 MIMAT0006402 Macaca mulatta miR-525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>mml-miR-149-5p MIMAT0006210 Macaca mulatta miR-149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>gga-miR-1794 MIMAT0007708 Gallus gallus miR-1794
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctggc 7
||||||
Sbjct: 6 tctggc 1
>gga-miR-1699 MIMAT0007591 Gallus gallus miR-1699
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 6 ctctgg 1
>mml-miR-514a-5p MIMAT0026748 Macaca mulatta miR-514a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 3 ctctgg 8
>hsa-miR-514a-5p MIMAT0022702 Homo sapiens miR-514a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctctgg 6
||||||
Sbjct: 3 ctctgg 8
>hsa-miR-525-5p MIMAT0002838 Homo sapiens miR-525-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>hsa-miR-520a-5p MIMAT0002833 Homo sapiens miR-520a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctctgg 6
||||||
Sbjct: 8 ctctgg 3
>hsa-miR-149-5p MIMAT0000450 Homo sapiens miR-149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
>mmu-miR-149-5p MIMAT0000159 Mus musculus miR-149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctggc 7
||||||
Sbjct: 1 tctggc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 115
Number of successful extensions: 77
Number of sequences better than 100.0: 77
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 77
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
