BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h18-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvt-miR-H18-3p MIMAT0012875 Herpesvirus of miR-H18-3p 16 6.9
oha-miR-1388-3p MIMAT0036714 Ophiophagus hannah miR-1388-3p 14 27
chi-miR-1388-3p MIMAT0035959 Capra hircus miR-1388-3p 14 27
cfa-miR-8817 MIMAT0034307 Canis familiaris miR-8817 14 27
sma-miR-8481-5p MIMAT0033683 Schistosoma mansoni miR-8481-5p 14 27
ssa-miR-1338-3p MIMAT0032336 Salmo salar miR-1338-3p 14 27
cbr-miR-7585 MIMAT0029588 Caenorhabditis briggsae miR-7585 14 27
cbr-miR-7584 MIMAT0029587 Caenorhabditis briggsae miR-7584 14 27
ipu-miR-1388 MIMAT0029415 Ictalurus punctatus miR-1388 14 27
mdo-miR-7398g-3p MIMAT0028931 Monodelphis domestica miR-7398g-3p 14 27
gga-miR-6565-5p MIMAT0025635 Gallus gallus miR-6565-5p 14 27
sha-miR-352 MIMAT0022772 Sarcophilus harrisii miR-352 14 27
ola-miR-1388-3p MIMAT0022568 Oryzias latipes miR-1388-3p 14 27
aca-miR-1388-3p MIMAT0021761 Anolis carolinensis miR-1388-3p 14 27
mtr-miR5244 MIMAT0021240 Medicago truncatula miR5244 14 27
pma-miR-4574 MIMAT0019607 Petromyzon marinus miR-4574 14 27
mghv-miR-M1-13-3p MIMAT0018173 Mouse gammaherpesvirus miR-M1-13-3p 14 27
tgu-miR-1388-3p MIMAT0014594 Taeniopygia guttata miR-1388-3p 14 27
bta-miR-1388-3p MIMAT0013591 Bos taurus miR-1388-3p 14 27
dsi-miR-977 MIMAT0012423 Drosophila simulans miR-977 14 27
dre-miR-1388-3p MIMAT0011293 Danio rerio miR-1388-3p 14 27
dvi-miR-285-5p MIMAT0032089 Drosophila virilis miR-285-5p 14 27
gga-miR-1452 MIMAT0007328 Gallus gallus miR-1452 14 27
oan-miR-1388-3p MIMAT0007169 Ornithorhynchus anatinus miR-1388-3p 14 27
dme-miR-977-3p MIMAT0005493 Drosophila melanogaster miR-977-3p 14 27
ptr-miR-216a MIMAT0002559 Pan troglodytes miR-216a 14 27
dme-miR-285-5p MIMAT0020817 Drosophila melanogaster miR-285-5p 14 27
>hvt-miR-H18-3p MIMAT0012875 Herpesvirus of miR-H18-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctgagata 8
||||||||
Sbjct: 1 ctgagata 8
>oha-miR-1388-3p MIMAT0036714 Ophiophagus hannah miR-1388-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>chi-miR-1388-3p MIMAT0035959 Capra hircus miR-1388-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>cfa-miR-8817 MIMAT0034307 Canis familiaris miR-8817
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgagata 8
|||||||
Sbjct: 2 tgagata 8
>sma-miR-8481-5p MIMAT0033683 Schistosoma mansoni miR-8481-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgagat 7
|||||||
Sbjct: 2 ctgagat 8
>ssa-miR-1338-3p MIMAT0032336 Salmo salar miR-1338-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>cbr-miR-7585 MIMAT0029588 Caenorhabditis briggsae miR-7585
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgagata 8
|||||||
Sbjct: 1 tgagata 7
>cbr-miR-7584 MIMAT0029587 Caenorhabditis briggsae miR-7584
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgagata 8
|||||||
Sbjct: 1 tgagata 7
>ipu-miR-1388 MIMAT0029415 Ictalurus punctatus miR-1388
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>mdo-miR-7398g-3p MIMAT0028931 Monodelphis domestica
miR-7398g-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgagata 8
|||||||
Sbjct: 7 tgagata 1
>gga-miR-6565-5p MIMAT0025635 Gallus gallus miR-6565-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgagata 8
|||||||
Sbjct: 2 tgagata 8
>sha-miR-352 MIMAT0022772 Sarcophilus harrisii miR-352
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>ola-miR-1388-3p MIMAT0022568 Oryzias latipes miR-1388-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>aca-miR-1388-3p MIMAT0021761 Anolis carolinensis miR-1388-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>mtr-miR5244 MIMAT0021240 Medicago truncatula miR5244
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgagata 8
|||||||
Sbjct: 7 tgagata 1
>pma-miR-4574 MIMAT0019607 Petromyzon marinus miR-4574
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgagat 7
|||||||
Sbjct: 2 ctgagat 8
>mghv-miR-M1-13-3p MIMAT0018173 Mouse gammaherpesvirus
miR-M1-13-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgagata 8
|||||||
Sbjct: 7 tgagata 1
>tgu-miR-1388-3p MIMAT0014594 Taeniopygia guttata miR-1388-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>bta-miR-1388-3p MIMAT0013591 Bos taurus miR-1388-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>dsi-miR-977 MIMAT0012423 Drosophila simulans miR-977
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgagata 8
|||||||
Sbjct: 1 tgagata 7
>dre-miR-1388-3p MIMAT0011293 Danio rerio miR-1388-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>dvi-miR-285-5p MIMAT0032089 Drosophila virilis miR-285-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgagat 7
|||||||
Sbjct: 2 ctgagat 8
>gga-miR-1452 MIMAT0007328 Gallus gallus miR-1452
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgagata 8
|||||||
Sbjct: 2 tgagata 8
>oan-miR-1388-3p MIMAT0007169 Ornithorhynchus anatinus
miR-1388-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgagat 7
|||||||
Sbjct: 7 ctgagat 1
>dme-miR-977-3p MIMAT0005493 Drosophila melanogaster miR-977-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgagata 8
|||||||
Sbjct: 1 tgagata 7
>ptr-miR-216a MIMAT0002559 Pan troglodytes miR-216a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgagata 8
|||||||
Sbjct: 8 tgagata 2
>dme-miR-285-5p MIMAT0020817 Drosophila melanogaster miR-285-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgagat 7
|||||||
Sbjct: 2 ctgagat 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 328
Number of extensions: 300
Number of successful extensions: 272
Number of sequences better than 100.0: 27
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 27
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
