BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h3
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bta-miR-2287 MIMAT0011794 Bos taurus miR-2287 16 6.9
mmu-miR-1955-5p MIMAT0009426 Mus musculus miR-1955-5p 16 6.9
hsv1-miR-H3-3p MIMAT0008400 Herpes Simplex miR-H3-3p 16 6.9
eca-miR-9065 MIMAT0034610 Equus caballus miR-9065 14 27
eca-miR-8924 MIMAT0034452 Equus caballus miR-8924 14 27
cfa-miR-8819 MIMAT0034309 Canis familiaris miR-8819 14 27
gra-miR7506b MIMAT0034134 Gossypium raimondii miR7506b 14 27
hsa-miR-5588-3p MIMAT0022296 Homo sapiens miR-5588-3p 14 27
mtr-miR5285c MIMAT0021345 Medicago truncatula miR5285c 14 27
mtr-miR5285b MIMAT0021344 Medicago truncatula miR5285b 14 27
mtr-miR5285a MIMAT0021343 Medicago truncatula miR5285a 14 27
dme-miR-4960-3p MIMAT0020180 Drosophila melanogaster miR-4960-3p 14 27
hsa-miR-4298 MIMAT0016852 Homo sapiens miR-4298 14 27
cte-miR-1990c-3p MIMAT0013548 Capitella teleta miR-1990c-3p 14 27
gga-miR-1683 MIMAT0007570 Gallus gallus miR-1683 14 27
dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p 14 27
>bta-miR-2287 MIMAT0011794 Bos taurus miR-2287
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctgggact 8
||||||||
Sbjct: 1 ctgggact 8
>mmu-miR-1955-5p MIMAT0009426 Mus musculus miR-1955-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ctgggact 8
||||||||
Sbjct: 8 ctgggact 1
>hsv1-miR-H3-3p MIMAT0008400 Herpes Simplex miR-H3-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctgggact 8
||||||||
Sbjct: 1 ctgggact 8
>eca-miR-9065 MIMAT0034610 Equus caballus miR-9065
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggact 8
|||||||
Sbjct: 1 tgggact 7
>eca-miR-8924 MIMAT0034452 Equus caballus miR-8924
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggact 8
|||||||
Sbjct: 1 tgggact 7
>cfa-miR-8819 MIMAT0034309 Canis familiaris miR-8819
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgggac 7
|||||||
Sbjct: 8 ctgggac 2
>gra-miR7506b MIMAT0034134 Gossypium raimondii miR7506b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggac 7
|||||||
Sbjct: 1 ctgggac 7
>hsa-miR-5588-3p MIMAT0022296 Homo sapiens miR-5588-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgggact 8
|||||||
Sbjct: 8 tgggact 2
>mtr-miR5285c MIMAT0021345 Medicago truncatula miR5285c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggact 8
|||||||
Sbjct: 1 tgggact 7
>mtr-miR5285b MIMAT0021344 Medicago truncatula miR5285b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggact 8
|||||||
Sbjct: 1 tgggact 7
>mtr-miR5285a MIMAT0021343 Medicago truncatula miR5285a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggact 8
|||||||
Sbjct: 1 tgggact 7
>dme-miR-4960-3p MIMAT0020180 Drosophila melanogaster
miR-4960-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggac 7
|||||||
Sbjct: 1 ctgggac 7
>hsa-miR-4298 MIMAT0016852 Homo sapiens miR-4298
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggac 7
|||||||
Sbjct: 1 ctgggac 7
>cte-miR-1990c-3p MIMAT0013548 Capitella teleta miR-1990c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggact 8
|||||||
Sbjct: 1 tgggact 7
>gga-miR-1683 MIMAT0007570 Gallus gallus miR-1683
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggac 7
|||||||
Sbjct: 2 ctgggac 8
>dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggac 7
|||||||
Sbjct: 2 ctgggac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 220
Number of extensions: 201
Number of successful extensions: 158
Number of sequences better than 100.0: 16
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
