BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-13-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-8908m MIMAT0034717 Equus caballus miR-8908m 14 20
ppc-miR-2237d-3p MIMAT0032998 Pristionchus pacificus miR-2237d-3p 14 20
ssa-miR-150-3p MIMAT0032384 Salmo salar miR-150-3p 14 20
ipu-miR-7567 MIMAT0029566 Ictalurus punctatus miR-7567 14 20
mmu-miR-6998-5p MIMAT0027898 Mus musculus miR-6998-5p 14 20
mmu-miR-6905-5p MIMAT0027710 Mus musculus miR-6905-5p 14 20
hsa-miR-6860 MIMAT0027622 Homo sapiens miR-6860 14 20
gga-miR-6563-3p MIMAT0025835 Gallus gallus miR-6563-3p 14 20
mmu-miR-1231-5p MIMAT0022357 Mus musculus miR-1231-5p 14 20
asu-miR-279a-5p MIMAT0021511 Ascaris suum miR-279a-5p 14 20
hsa-miR-5189-5p MIMAT0021120 Homo sapiens miR-5189-5p 14 20
ssc-miR-4335 MIMAT0017968 Sus scrofa miR-4335 14 20
ppy-miR-1285b MIMAT0016208 Pongo pygmaeus miR-1285b 14 20
hsa-miR-3187-5p MIMAT0019216 Homo sapiens miR-3187-5p 14 20
ssc-miR-1285 MIMAT0013954 Sus scrofa miR-1285 14 20
ptr-miR-612 MIMAT0008274 Pan troglodytes miR-612 14 20
ptr-miR-1285 MIMAT0008004 Pan troglodytes miR-1285 14 20
gga-miR-1635 MIMAT0007508 Gallus gallus miR-1635 14 20
odi-miR-1476-5p MIMAT0006027 Oikopleura dioica miR-1476-5p 14 20
odi-miR-1475 MIMAT0006026 Oikopleura dioica miR-1475 14 20
hsa-miR-1285-3p MIMAT0005876 Homo sapiens miR-1285-3p 14 20
rlcv-miR-rL1-13-5p MIMAT0019090 Rhesus lymphocryptovirus miR-rL1... 14 20
hsa-miR-612 MIMAT0003280 Homo sapiens miR-612 14 20
ata-miR169a-3p MIMAT0037209 Aegilops tauschii miR169a-3p 12 80
ata-miR169b-3p MIMAT0037147 Aegilops tauschii miR169b-3p 12 80
ata-miR169j-3p MIMAT0037143 Aegilops tauschii miR169j-3p 12 80
efu-miR-9189d MIMAT0034884 Eptesicus fuscus miR-9189d 12 80
efu-miR-9246a MIMAT0034860 Eptesicus fuscus miR-9246a 12 80
eca-miR-8908l MIMAT0034712 Equus caballus miR-8908l 12 80
ppc-miR-8224-3p MIMAT0032891 Pristionchus pacificus miR-8224-3p 12 80
hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p 12 80
prd-miR-86-3p MIMAT0030467 Panagrellus redivivus miR-86-3p 12 80
cbn-miR-7633 MIMAT0029676 Caenorhabditis brenneri miR-7633 12 80
oan-miR-7430-5p MIMAT0029010 Ornithorhynchus anatinus miR-7430-5p 12 80
mdo-miR-1544e-5p MIMAT0031033 Monodelphis domestica miR-1544e-5p 12 80
mdo-miR-7276-3p MIMAT0028527 Monodelphis domestica miR-7276-3p 12 80
bma-miR-5882b MIMAT0026386 Brugia malayi miR-5882b 12 80
hsa-miR-6840-3p MIMAT0027583 Homo sapiens miR-6840-3p 12 80
hsa-miR-6724-5p MIMAT0025856 Homo sapiens miR-6724-5p 12 80
hsa-miR-6721-5p MIMAT0025852 Homo sapiens miR-6721-5p 12 80
gga-miR-6672-3p MIMAT0025774 Gallus gallus miR-6672-3p 12 80
pde-miR390 MIMAT0025331 Pinus densata miR390 12 80
tur-miR-5736b-3p MIMAT0023079 Tetranychus urticae miR-5736b-3p 12 80
tur-miR-5731-3p MIMAT0023057 Tetranychus urticae miR-5731-3p 12 80
asu-miR-86-3p MIMAT0021480 Ascaris suum miR-86-3p 12 80
mtr-miR5243 MIMAT0021239 Medicago truncatula miR5243 12 80
bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166 12 80
mmu-miR-5107-5p MIMAT0020615 Mus musculus miR-5107-5p 12 80
cel-miR-4814-3p MIMAT0020003 Caenorhabditis elegans miR-4814-3p 12 80
hsa-miR-4674 MIMAT0019756 Homo sapiens miR-4674 12 80
hsa-miR-4641 MIMAT0019701 Homo sapiens miR-4641 12 80
pma-miR-4623 MIMAT0019657 Petromyzon marinus miR-4623 12 80
tca-miR-3862-5p MIMAT0018800 Tribolium castaneum miR-3862-5p 12 80
rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p 12 80
bmo-miR-3277 MIMAT0015462 Bombyx mori miR-3277 12 80
bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751 12 80
bta-miR-2450a MIMAT0012030 Bos taurus miR-2450a 12 80
bta-miR-2449 MIMAT0012027 Bos taurus miR-2449 12 80
bta-miR-2407 MIMAT0011965 Bos taurus miR-2407 12 80
bta-miR-2314 MIMAT0011834 Bos taurus miR-2314 12 80
crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p 12 80
cel-miR-1832b-3p MIMAT0011450 Caenorhabditis elegans miR-1832b-3p 12 80
cel-miR-1821-5p MIMAT0032034 Caenorhabditis elegans miR-1821-5p 12 80
gga-miR-1585 MIMAT0007447 Gallus gallus miR-1585 12 80
gga-miR-1453 MIMAT0007330 Gallus gallus miR-1453 12 80
oan-miR-1365-5p MIMAT0007028 Ornithorhynchus anatinus miR-1365-5p 12 80
oan-miR-1338-3p MIMAT0006840 Ornithorhynchus anatinus miR-1338-3p 12 80
pta-miR390 MIMAT0004998 Pinus taeda miR390 12 80
hsa-miR-939-3p MIMAT0022939 Homo sapiens miR-939-3p 12 80
mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p 12 80
cel-miR-86-3p MIMAT0020776 Caenorhabditis elegans miR-86-3p 12 80
>eca-miR-8908m MIMAT0034717 Equus caballus miR-8908m
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgggca 7
|||||||
Sbjct: 8 ctgggca 2
>ppc-miR-2237d-3p MIMAT0032998 Pristionchus pacificus
miR-2237d-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgggca 7
|||||||
Sbjct: 8 ctgggca 2
>ssa-miR-150-3p MIMAT0032384 Salmo salar miR-150-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 1 ctgggca 7
>ipu-miR-7567 MIMAT0029566 Ictalurus punctatus miR-7567
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgggca 7
|||||||
Sbjct: 8 ctgggca 2
>mmu-miR-6998-5p MIMAT0027898 Mus musculus miR-6998-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 1 ctgggca 7
>mmu-miR-6905-5p MIMAT0027710 Mus musculus miR-6905-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>hsa-miR-6860 MIMAT0027622 Homo sapiens miR-6860
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>gga-miR-6563-3p MIMAT0025835 Gallus gallus miR-6563-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>mmu-miR-1231-5p MIMAT0022357 Mus musculus miR-1231-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>asu-miR-279a-5p MIMAT0021511 Ascaris suum miR-279a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 1 ctgggca 7
>hsa-miR-5189-5p MIMAT0021120 Homo sapiens miR-5189-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>ssc-miR-4335 MIMAT0017968 Sus scrofa miR-4335
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgggca 7
|||||||
Sbjct: 8 ctgggca 2
>ppy-miR-1285b MIMAT0016208 Pongo pygmaeus miR-1285b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>hsa-miR-3187-5p MIMAT0019216 Homo sapiens miR-3187-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>ssc-miR-1285 MIMAT0013954 Sus scrofa miR-1285
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 1 ctgggca 7
>ptr-miR-612 MIMAT0008274 Pan troglodytes miR-612
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>ptr-miR-1285 MIMAT0008004 Pan troglodytes miR-1285
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>gga-miR-1635 MIMAT0007508 Gallus gallus miR-1635
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgggca 7
|||||||
Sbjct: 7 ctgggca 1
>odi-miR-1476-5p MIMAT0006027 Oikopleura dioica miR-1476-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>odi-miR-1475 MIMAT0006026 Oikopleura dioica miR-1475
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>hsa-miR-1285-3p MIMAT0005876 Homo sapiens miR-1285-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>rlcv-miR-rL1-13-5p MIMAT0019090 Rhesus lymphocryptovirus
miR-rL1-13-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>hsa-miR-612 MIMAT0003280 Homo sapiens miR-612
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggca 7
|||||||
Sbjct: 2 ctgggca 8
>ata-miR169a-3p MIMAT0037209 Aegilops tauschii miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>ata-miR169b-3p MIMAT0037147 Aegilops tauschii miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>ata-miR169j-3p MIMAT0037143 Aegilops tauschii miR169j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>efu-miR-9189d MIMAT0034884 Eptesicus fuscus miR-9189d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>efu-miR-9246a MIMAT0034860 Eptesicus fuscus miR-9246a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 6 tgggca 1
>eca-miR-8908l MIMAT0034712 Equus caballus miR-8908l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 8 tgggca 3
>ppc-miR-8224-3p MIMAT0032891 Pristionchus pacificus miR-8224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>prd-miR-86-3p MIMAT0030467 Panagrellus redivivus miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>cbn-miR-7633 MIMAT0029676 Caenorhabditis brenneri miR-7633
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 7 tgggca 2
>oan-miR-7430-5p MIMAT0029010 Ornithorhynchus anatinus
miR-7430-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>mdo-miR-1544e-5p MIMAT0031033 Monodelphis domestica
miR-1544e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>mdo-miR-7276-3p MIMAT0028527 Monodelphis domestica miR-7276-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 6 ctgggc 1
>bma-miR-5882b MIMAT0026386 Brugia malayi miR-5882b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>hsa-miR-6840-3p MIMAT0027583 Homo sapiens miR-6840-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 6 ctgggc 1
>hsa-miR-6724-5p MIMAT0025856 Homo sapiens miR-6724-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>hsa-miR-6721-5p MIMAT0025852 Homo sapiens miR-6721-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>gga-miR-6672-3p MIMAT0025774 Gallus gallus miR-6672-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>pde-miR390 MIMAT0025331 Pinus densata miR390
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>tur-miR-5736b-3p MIMAT0023079 Tetranychus urticae miR-5736b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 8 tgggca 3
>tur-miR-5731-3p MIMAT0023057 Tetranychus urticae miR-5731-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>asu-miR-86-3p MIMAT0021480 Ascaris suum miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>mtr-miR5243 MIMAT0021239 Medicago truncatula miR5243
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 6 tgggca 1
>mmu-miR-5107-5p MIMAT0020615 Mus musculus miR-5107-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>cel-miR-4814-3p MIMAT0020003 Caenorhabditis elegans miR-4814-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>hsa-miR-4674 MIMAT0019756 Homo sapiens miR-4674
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>hsa-miR-4641 MIMAT0019701 Homo sapiens miR-4641
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 6 tgggca 1
>pma-miR-4623 MIMAT0019657 Petromyzon marinus miR-4623
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>tca-miR-3862-5p MIMAT0018800 Tribolium castaneum miR-3862-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 6 tgggca 1
>bmo-miR-3277 MIMAT0015462 Bombyx mori miR-3277
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>bta-miR-2450a MIMAT0012030 Bos taurus miR-2450a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>bta-miR-2449 MIMAT0012027 Bos taurus miR-2449
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>bta-miR-2407 MIMAT0011965 Bos taurus miR-2407
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>bta-miR-2314 MIMAT0011834 Bos taurus miR-2314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 6 tgggca 1
>crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>cel-miR-1832b-3p MIMAT0011450 Caenorhabditis elegans
miR-1832b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 3 tgggca 8
>cel-miR-1821-5p MIMAT0032034 Caenorhabditis elegans miR-1821-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 6 tgggca 1
>gga-miR-1585 MIMAT0007447 Gallus gallus miR-1585
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 8 tgggca 3
>gga-miR-1453 MIMAT0007330 Gallus gallus miR-1453
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggca 7
||||||
Sbjct: 1 tgggca 6
>oan-miR-1365-5p MIMAT0007028 Ornithorhynchus anatinus
miR-1365-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>oan-miR-1338-3p MIMAT0006840 Ornithorhynchus anatinus
miR-1338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>pta-miR390 MIMAT0004998 Pinus taeda miR390
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>hsa-miR-939-3p MIMAT0022939 Homo sapiens miR-939-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggca 7
||||||
Sbjct: 6 tgggca 1
>cel-miR-86-3p MIMAT0020776 Caenorhabditis elegans miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 107
Number of extensions: 84
Number of successful extensions: 71
Number of sequences better than 100.0: 71
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 71
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
