BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-6724-5p MIMAT0025856 Homo sapiens miR-6724-5p 14 20
pab-miR950-3p MIMAT0018124 Picea abies miR950-3p 14 20
chi-miR-1291 MIMAT0035935 Capra hircus miR-1291 12 80
efu-miR-9321 MIMAT0035018 Eptesicus fuscus miR-9321 12 80
eca-miR-8908m MIMAT0034717 Equus caballus miR-8908m 12 80
gra-miR8757a MIMAT0034186 Gossypium raimondii miR8757a 12 80
ppc-miR-8298-3p MIMAT0033114 Pristionchus pacificus miR-8298-3p 12 80
ppc-miR-2237d-3p MIMAT0032998 Pristionchus pacificus miR-2237d-3p 12 80
ppc-miR-8255-3p MIMAT0032979 Pristionchus pacificus miR-8255-3p 12 80
ppc-miR-8224-3p MIMAT0032891 Pristionchus pacificus miR-8224-3p 12 80
ssa-miR-150-3p MIMAT0032384 Salmo salar miR-150-3p 12 80
hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p 12 80
prd-miR-7939g-5p MIMAT0030772 Panagrellus redivivus miR-7939g-5p 12 80
prd-miR-7939j-5p MIMAT0030736 Panagrellus redivivus miR-7939j-5p 12 80
prd-miR-7939e-5p MIMAT0030652 Panagrellus redivivus miR-7939e-5p 12 80
prd-miR-7911a-3p MIMAT0030647 Panagrellus redivivus miR-7911a-3p 12 80
prd-miR-7939d-5p MIMAT0030642 Panagrellus redivivus miR-7939d-5p 12 80
prd-miR-7939f-5p MIMAT0030640 Panagrellus redivivus miR-7939f-5p 12 80
prd-miR-7939i-5p MIMAT0030636 Panagrellus redivivus miR-7939i-5p 12 80
prd-miR-86-3p MIMAT0030467 Panagrellus redivivus miR-86-3p 12 80
bdi-miR7724b-3p MIMAT0030177 Brachypodium distachyon miR7724b-3p 12 80
bdi-miR7724a-3p MIMAT0030175 Brachypodium distachyon miR7724a-3p 12 80
ipu-miR-7567 MIMAT0029566 Ictalurus punctatus miR-7567 12 80
mdo-miR-7386k-5p MIMAT0028848 Monodelphis domestica miR-7386k-5p 12 80
mdo-miR-1544e-5p MIMAT0031033 Monodelphis domestica miR-1544e-5p 12 80
mdo-miR-7276-3p MIMAT0028527 Monodelphis domestica miR-7276-3p 12 80
mdo-miR-7256-3p MIMAT0028479 Monodelphis domestica miR-7256-3p 12 80
hsa-miR-7155-3p MIMAT0028221 Homo sapiens miR-7155-3p 12 80
mmu-miR-6998-5p MIMAT0027898 Mus musculus miR-6998-5p 12 80
hsa-miR-6840-3p MIMAT0027583 Homo sapiens miR-6840-3p 12 80
hsa-miR-6508-3p MIMAT0025473 Homo sapiens miR-6508-3p 12 80
pde-miR390 MIMAT0025331 Pinus densata miR390 12 80
hsa-miR-6075 MIMAT0023700 Homo sapiens miR-6075 12 80
mmu-miR-5621-3p MIMAT0022370 Mus musculus miR-5621-3p 12 80
asu-miR-279a-5p MIMAT0021511 Ascaris suum miR-279a-5p 12 80
asu-miR-86-3p MIMAT0021480 Ascaris suum miR-86-3p 12 80
hsa-miR-4674 MIMAT0019756 Homo sapiens miR-4674 12 80
hsa-miR-4640-5p MIMAT0019699 Homo sapiens miR-4640-5p 12 80
pma-miR-4547-3p MIMAT0019579 Petromyzon marinus miR-4547-3p 12 80
tca-miR-193-5p MIMAT0018896 Tribolium castaneum miR-193-5p 12 80
ssc-miR-4335 MIMAT0017968 Sus scrofa miR-4335 12 80
hsa-miR-3136-3p MIMAT0019203 Homo sapiens miR-3136-3p 12 80
ssc-miR-1285 MIMAT0013954 Sus scrofa miR-1285 12 80
bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751 12 80
bta-miR-2284r MIMAT0012010 Bos taurus miR-2284r 12 80
bta-miR-2407 MIMAT0011965 Bos taurus miR-2407 12 80
bta-miR-2284s MIMAT0011811 Bos taurus miR-2284s 12 80
crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p 12 80
osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2 12 80
gga-miR-1604 MIMAT0007470 Gallus gallus miR-1604 12 80
oan-miR-1365-5p MIMAT0007028 Ornithorhynchus anatinus miR-1365-5p 12 80
oan-miR-1338-3p MIMAT0006840 Ornithorhynchus anatinus miR-1338-3p 12 80
cre-miR1153-5p.1 MIMAT0005398 Chlamydomonas reinhardtii miR1153-... 12 80
pta-miR390 MIMAT0004998 Pinus taeda miR390 12 80
hsa-miR-939-3p MIMAT0022939 Homo sapiens miR-939-3p 12 80
ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p 12 80
mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p 12 80
rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus miR-rL1-... 12 80
rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus miR-rL1-... 12 80
cel-miR-86-3p MIMAT0020776 Caenorhabditis elegans miR-86-3p 12 80
>hsa-miR-6724-5p MIMAT0025856 Homo sapiens miR-6724-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggcc 7
|||||||
Sbjct: 1 ctgggcc 7
>pab-miR950-3p MIMAT0018124 Picea abies miR950-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgggcc 7
|||||||
Sbjct: 2 ctgggcc 8
>chi-miR-1291 MIMAT0035935 Capra hircus miR-1291
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 8 tgggcc 3
>efu-miR-9321 MIMAT0035018 Eptesicus fuscus miR-9321
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>eca-miR-8908m MIMAT0034717 Equus caballus miR-8908m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>gra-miR8757a MIMAT0034186 Gossypium raimondii miR8757a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>ppc-miR-8298-3p MIMAT0033114 Pristionchus pacificus miR-8298-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>ppc-miR-2237d-3p MIMAT0032998 Pristionchus pacificus
miR-2237d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>ppc-miR-8255-3p MIMAT0032979 Pristionchus pacificus miR-8255-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 8 tgggcc 3
>ppc-miR-8224-3p MIMAT0032891 Pristionchus pacificus miR-8224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>ssa-miR-150-3p MIMAT0032384 Salmo salar miR-150-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>prd-miR-7939g-5p MIMAT0030772 Panagrellus redivivus
miR-7939g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>prd-miR-7939j-5p MIMAT0030736 Panagrellus redivivus
miR-7939j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>prd-miR-7939e-5p MIMAT0030652 Panagrellus redivivus
miR-7939e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>prd-miR-7911a-3p MIMAT0030647 Panagrellus redivivus
miR-7911a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>prd-miR-7939d-5p MIMAT0030642 Panagrellus redivivus
miR-7939d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>prd-miR-7939f-5p MIMAT0030640 Panagrellus redivivus
miR-7939f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>prd-miR-7939i-5p MIMAT0030636 Panagrellus redivivus
miR-7939i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>prd-miR-86-3p MIMAT0030467 Panagrellus redivivus miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>bdi-miR7724b-3p MIMAT0030177 Brachypodium distachyon
miR7724b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 8 tgggcc 3
>bdi-miR7724a-3p MIMAT0030175 Brachypodium distachyon
miR7724a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 8 tgggcc 3
>ipu-miR-7567 MIMAT0029566 Ictalurus punctatus miR-7567
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>mdo-miR-7386k-5p MIMAT0028848 Monodelphis domestica
miR-7386k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>mdo-miR-1544e-5p MIMAT0031033 Monodelphis domestica
miR-1544e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>mdo-miR-7276-3p MIMAT0028527 Monodelphis domestica miR-7276-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 6 ctgggc 1
>mdo-miR-7256-3p MIMAT0028479 Monodelphis domestica miR-7256-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>hsa-miR-7155-3p MIMAT0028221 Homo sapiens miR-7155-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 7 tgggcc 2
>mmu-miR-6998-5p MIMAT0027898 Mus musculus miR-6998-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>hsa-miR-6840-3p MIMAT0027583 Homo sapiens miR-6840-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 6 ctgggc 1
>hsa-miR-6508-3p MIMAT0025473 Homo sapiens miR-6508-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>pde-miR390 MIMAT0025331 Pinus densata miR390
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>hsa-miR-6075 MIMAT0023700 Homo sapiens miR-6075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 8 tgggcc 3
>mmu-miR-5621-3p MIMAT0022370 Mus musculus miR-5621-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>asu-miR-279a-5p MIMAT0021511 Ascaris suum miR-279a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>asu-miR-86-3p MIMAT0021480 Ascaris suum miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>hsa-miR-4674 MIMAT0019756 Homo sapiens miR-4674
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>hsa-miR-4640-5p MIMAT0019699 Homo sapiens miR-4640-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>pma-miR-4547-3p MIMAT0019579 Petromyzon marinus miR-4547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 6 tgggcc 1
>tca-miR-193-5p MIMAT0018896 Tribolium castaneum miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>ssc-miR-4335 MIMAT0017968 Sus scrofa miR-4335
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>hsa-miR-3136-3p MIMAT0019203 Homo sapiens miR-3136-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 7 tgggcc 2
>ssc-miR-1285 MIMAT0013954 Sus scrofa miR-1285
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>bta-miR-2284r MIMAT0012010 Bos taurus miR-2284r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 8 tgggcc 3
>bta-miR-2407 MIMAT0011965 Bos taurus miR-2407
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>bta-miR-2284s MIMAT0011811 Bos taurus miR-2284s
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 7 tgggcc 2
>crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
>osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 7 tgggcc 2
>gga-miR-1604 MIMAT0007470 Gallus gallus miR-1604
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 8 tgggcc 3
>oan-miR-1365-5p MIMAT0007028 Ornithorhynchus anatinus
miR-1365-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>oan-miR-1338-3p MIMAT0006840 Ornithorhynchus anatinus
miR-1338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>cre-miR1153-5p.1 MIMAT0005398 Chlamydomonas reinhardtii
miR1153-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 1 tgggcc 6
>pta-miR390 MIMAT0004998 Pinus taeda miR390
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgggc 6
||||||
Sbjct: 8 ctgggc 3
>hsa-miR-939-3p MIMAT0022939 Homo sapiens miR-939-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 3 ctgggc 8
>ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggcc 7
||||||
Sbjct: 7 tgggcc 2
>mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus
miR-rL1-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus
miR-rL1-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggcc 7
||||||
Sbjct: 3 tgggcc 8
>cel-miR-86-3p MIMAT0020776 Caenorhabditis elegans miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgggc 6
||||||
Sbjct: 1 ctgggc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 93
Number of extensions: 91
Number of successful extensions: 61
Number of sequences better than 100.0: 60
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 61
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
