BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-9-3p MIMAT0036954 Ophiophagus hannah miR-9-3p 12 80
oha-let-7c-2-3p MIMAT0036632 Ophiophagus hannah let-7c-2-3p 12 80
gma-miR9765 MIMAT0036402 Glycine max miR9765 12 80
gma-miR9764 MIMAT0036401 Glycine max miR9764 12 80
chi-miR-1185-3p MIMAT0035916 Capra hircus miR-1185-3p 12 80
gsa-miR-993-5p MIMAT0035304 Gyrodactylus salaris miR-993-5p 12 80
cfa-miR-1185 MIMAT0034383 Canis familiaris miR-1185 12 80
pxy-miR-8525 MIMAT0033767 Plutella xylostella miR-8525 12 80
ssa-let-7a-5-3p MIMAT0032692 Salmo salar let-7a-5-3p 12 80
ssa-let-7a-4-3p MIMAT0032691 Salmo salar let-7a-4-3p 12 80
ssa-let-7g-3p MIMAT0032271 Salmo salar let-7g-3p 12 80
stu-miR7122-5p MIMAT0031224 Solanum tuberosum miR7122-5p 12 80
prd-miR-7945-5p MIMAT0030750 Panagrellus redivivus miR-7945-5p 12 80
mdo-miR-7371b-5p MIMAT0028774 Monodelphis domestica miR-7371b-5p 12 80
mml-miR-7207-3p MIMAT0028381 Macaca mulatta miR-7207-3p 12 80
mdm-miR7122b MIMAT0026049 Malus domestica miR7122b 12 80
mdm-miR7122a MIMAT0026048 Malus domestica miR7122a 12 80
rno-miR-6216 MIMAT0024856 Rattus norvegicus miR-6216 12 80
hvu-miR6212 MIMAT0024840 Hordeum vulgare miR6212 12 80
tur-miR-5732-5p MIMAT0023062 Tetranychus urticae miR-5732-5p 12 80
aca-let-7a-3p MIMAT0021693 Anolis carolinensis let-7a-3p 12 80
tae-miR5084 MIMAT0020566 Triticum aestivum miR5084 12 80
hsa-miR-4999-5p MIMAT0021017 Homo sapiens miR-4999-5p 12 80
dme-miR-4909-3p MIMAT0020515 Drosophila melanogaster miR-4909-3p 12 80
mmu-miR-3963 MIMAT0019341 Mus musculus miR-3963 12 80
oar-miR-1185-3p MIMAT0019289 Ovis aries miR-1185-3p 12 80
far-miR1122 MIMAT0018366 Festuca arundinacea miR1122 12 80
tca-miR-iab-8-3p MIMAT0018699 Tribolium castaneum miR-iab-8-3p 12 80
aly-miR4247 MIMAT0017936 Arabidopsis lyrata miR4247 12 80
rno-miR-9b-3p MIMAT0017836 Rattus norvegicus miR-9b-3p 12 80
ppy-miR-675b MIMAT0016099 Pongo pygmaeus miR-675b 12 80
tgu-let-7a-4-3p MIMAT0031086 Taeniopygia guttata let-7a-4-3p 12 80
bmo-miR-2860 MIMAT0013800 Bombyx mori miR-2860 12 80
dsi-miR-iab-8-3p MIMAT0012505 Drosophila simulans miR-iab-8-3p 12 80
dps-miR-iab-8-3p MIMAT0012285 Drosophila pseudoobscura miR-iab-8-3p 12 80
bdi-miR1122 MIMAT0012183 Brachypodium distachyon miR1122 12 80
mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199 12 80
mml-miR-675-3p MIMAT0026908 Macaca mulatta miR-675-3p 12 80
cin-let-7d-3p MIMAT0015250 Ciona intestinalis let-7d-3p 12 80
oan-let-7f-2-3p MIMAT0009171 Ornithorhynchus anatinus let-7f-2-3p 12 80
oan-miR-1421l-1-3p MIMAT0007069 Ornithorhynchus anatinus miR-142... 12 80
oan-let-7b-3p MIMAT0006898 Ornithorhynchus anatinus let-7b-3p 12 80
tae-miR1122a MIMAT0005357 Triticum aestivum miR1122a 12 80
mmu-miR-582-5p MIMAT0005291 Mus musculus miR-582-5p 12 80
mmu-miR-466g MIMAT0004883 Mus musculus miR-466g 12 80
hsa-miR-675-3p MIMAT0006790 Homo sapiens miR-675-3p 12 80
mdo-let-7f-2-3p MIMAT0031040 Monodelphis domestica let-7f-2-3p 12 80
mdv1-miR-M5-3p MIMAT0003926 Mareks disease miR-M5-3p 12 80
bmo-let-7-3p MIMAT0015221 Bombyx mori let-7-3p 12 80
mmu-miR-675-3p MIMAT0003726 Mus musculus miR-675-3p 12 80
hsa-miR-1185-1-3p MIMAT0022838 Homo sapiens miR-1185-1-3p 12 80
hsa-miR-1185-2-3p MIMAT0022713 Homo sapiens miR-1185-2-3p 12 80
gga-let-7j-3p MIMAT0026542 Gallus gallus let-7j-3p 12 80
rno-let-7f-2-3p MIMAT0017090 Rattus norvegicus let-7f-2-3p 12 80
mmu-let-7f-2-3p MIMAT0017017 Mus musculus let-7f-2-3p 12 80
hsa-let-7f-2-3p MIMAT0004487 Homo sapiens let-7f-2-3p 12 80
>oha-miR-9-3p MIMAT0036954 Ophiophagus hannah miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>oha-let-7c-2-3p MIMAT0036632 Ophiophagus hannah let-7c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>gma-miR9765 MIMAT0036402 Glycine max miR9765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>gma-miR9764 MIMAT0036401 Glycine max miR9764
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>chi-miR-1185-3p MIMAT0035916 Capra hircus miR-1185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>gsa-miR-993-5p MIMAT0035304 Gyrodactylus salaris miR-993-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 3 ctgtat 8
>cfa-miR-1185 MIMAT0034383 Canis familiaris miR-1185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>pxy-miR-8525 MIMAT0033767 Plutella xylostella miR-8525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 3 ctgtat 8
>ssa-let-7a-5-3p MIMAT0032692 Salmo salar let-7a-5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>ssa-let-7a-4-3p MIMAT0032691 Salmo salar let-7a-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>ssa-let-7g-3p MIMAT0032271 Salmo salar let-7g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>stu-miR7122-5p MIMAT0031224 Solanum tuberosum miR7122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>prd-miR-7945-5p MIMAT0030750 Panagrellus redivivus miR-7945-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 3 ctgtat 8
>mdo-miR-7371b-5p MIMAT0028774 Monodelphis domestica
miR-7371b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 3 tgtatc 8
>mml-miR-7207-3p MIMAT0028381 Macaca mulatta miR-7207-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 3 ctgtat 8
>mdm-miR7122b MIMAT0026049 Malus domestica miR7122b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>mdm-miR7122a MIMAT0026048 Malus domestica miR7122a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>rno-miR-6216 MIMAT0024856 Rattus norvegicus miR-6216
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 6 tgtatc 1
>hvu-miR6212 MIMAT0024840 Hordeum vulgare miR6212
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 6 ctgtat 1
>tur-miR-5732-5p MIMAT0023062 Tetranychus urticae miR-5732-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 6 ctgtat 1
>aca-let-7a-3p MIMAT0021693 Anolis carolinensis let-7a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>tae-miR5084 MIMAT0020566 Triticum aestivum miR5084
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 6 ctgtat 1
>hsa-miR-4999-5p MIMAT0021017 Homo sapiens miR-4999-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 3 ctgtat 8
>dme-miR-4909-3p MIMAT0020515 Drosophila melanogaster
miR-4909-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 3 tgtatc 8
>mmu-miR-3963 MIMAT0019341 Mus musculus miR-3963
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 1 tgtatc 6
>oar-miR-1185-3p MIMAT0019289 Ovis aries miR-1185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>far-miR1122 MIMAT0018366 Festuca arundinacea miR1122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>tca-miR-iab-8-3p MIMAT0018699 Tribolium castaneum miR-iab-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>aly-miR4247 MIMAT0017936 Arabidopsis lyrata miR4247
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 1 tgtatc 6
>rno-miR-9b-3p MIMAT0017836 Rattus norvegicus miR-9b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 6 ctgtat 1
>ppy-miR-675b MIMAT0016099 Pongo pygmaeus miR-675b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 1 ctgtat 6
>tgu-let-7a-4-3p MIMAT0031086 Taeniopygia guttata let-7a-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>bmo-miR-2860 MIMAT0013800 Bombyx mori miR-2860
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 3 ctgtat 8
>dsi-miR-iab-8-3p MIMAT0012505 Drosophila simulans miR-iab-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>dps-miR-iab-8-3p MIMAT0012285 Drosophila pseudoobscura
miR-iab-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>bdi-miR1122 MIMAT0012183 Brachypodium distachyon miR1122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 7 tgtatc 2
>mml-miR-675-3p MIMAT0026908 Macaca mulatta miR-675-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 1 ctgtat 6
>cin-let-7d-3p MIMAT0015250 Ciona intestinalis let-7d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>oan-let-7f-2-3p MIMAT0009171 Ornithorhynchus anatinus
let-7f-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>oan-miR-1421l-1-3p MIMAT0007069 Ornithorhynchus anatinus
miR-1421l-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 1 tgtatc 6
>oan-let-7b-3p MIMAT0006898 Ornithorhynchus anatinus let-7b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>tae-miR1122a MIMAT0005357 Triticum aestivum miR1122a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>mmu-miR-582-5p MIMAT0005291 Mus musculus miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 6 ctgtat 1
>mmu-miR-466g MIMAT0004883 Mus musculus miR-466g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 6 ctgtat 1
>hsa-miR-675-3p MIMAT0006790 Homo sapiens miR-675-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 1 ctgtat 6
>mdo-let-7f-2-3p MIMAT0031040 Monodelphis domestica let-7f-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>mdv1-miR-M5-3p MIMAT0003926 Mareks disease miR-M5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 3 tgtatc 8
>bmo-let-7-3p MIMAT0015221 Bombyx mori let-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 1 ctgtat 6
>mmu-miR-675-3p MIMAT0003726 Mus musculus miR-675-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtat 6
||||||
Sbjct: 1 ctgtat 6
>hsa-miR-1185-1-3p MIMAT0022838 Homo sapiens miR-1185-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>hsa-miR-1185-2-3p MIMAT0022713 Homo sapiens miR-1185-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>gga-let-7j-3p MIMAT0026542 Gallus gallus let-7j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>rno-let-7f-2-3p MIMAT0017090 Rattus norvegicus let-7f-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>mmu-let-7f-2-3p MIMAT0017017 Mus musculus let-7f-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
>hsa-let-7f-2-3p MIMAT0004487 Homo sapiens let-7f-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtat 6
||||||
Sbjct: 8 ctgtat 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 68
Number of extensions: 68
Number of successful extensions: 56
Number of sequences better than 100.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
