BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h14-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR528-3p MIMAT0037193 Aegilops tauschii miR528-3p 14 20
mmu-miR-9769-5p MIMAT0036461 Mus musculus miR-9769-5p 14 20
eca-miR-6529 MIMAT0034760 Equus caballus miR-6529 14 20
cfa-miR-6529 MIMAT0034278 Canis familiaris miR-6529 14 20
prd-miR-7969-5p MIMAT0030840 Panagrellus redivivus miR-7969-5p 14 20
oan-miR-7413-5p MIMAT0028974 Ornithorhynchus anatinus miR-7413-5p 14 20
mml-miR-6529-3p MIMAT0028315 Macaca mulatta miR-6529-3p 14 20
mmu-miR-7043-3p MIMAT0027991 Mus musculus miR-7043-3p 14 20
mmu-miR-7005-3p MIMAT0027915 Mus musculus miR-7005-3p 14 20
hsa-miR-6889-3p MIMAT0027679 Homo sapiens miR-6889-3p 14 20
bdi-miR528-3p MIMAT0027045 Brachypodium distachyon miR528-3p 14 20
ssc-miR-2320-5p MIMAT0020597 Sus scrofa miR-2320-5p 14 20
hsv1-miR-H14-3p MIMAT0014692 Herpes Simplex miR-H14-3p 14 20
zma-miR528b-3p MIMAT0015363 Zea mays miR528b-3p 14 20
zma-miR528a-3p MIMAT0015362 Zea mays miR528a-3p 14 20
bta-miR-2320-5p MIMAT0011844 Bos taurus miR-2320-5p 14 20
ata-miR164b-3p MIMAT0037219 Aegilops tauschii miR164b-3p 12 80
oha-miR-455-5p MIMAT0036931 Ophiophagus hannah miR-455-5p 12 80
oha-miR-210-3p MIMAT0036827 Ophiophagus hannah miR-210-3p 12 80
tch-miR-210 MIMAT0036464 Tupaia chinensis miR-210 12 80
chi-miR-455-5p MIMAT0036241 Capra hircus miR-455-5p 12 80
efu-miR-19 MIMAT0034994 Eptesicus fuscus miR-19 12 80
efu-miR-9211 MIMAT0034802 Eptesicus fuscus miR-9211 12 80
cfa-miR-8868 MIMAT0034365 Canis familiaris miR-8868 12 80
gra-miR164a MIMAT0034113 Gossypium raimondii miR164a 12 80
sly-miR164a-3p MIMAT0033974 Solanum lycopersicum miR164a-3p 12 80
atr-miR8565a MIMAT0033846 Amborella trichopoda miR8565a 12 80
pxy-miR-8489b MIMAT0033775 Plutella xylostella miR-8489b 12 80
ssa-miR-455-5p MIMAT0032643 Salmo salar miR-455-5p 12 80
ssa-miR-210-3p MIMAT0032509 Salmo salar miR-210-3p 12 80
bbe-miR-210-5p MIMAT0031645 Branchiostoma belcheri miR-210-5p 12 80
bbe-let-7a-2-3p MIMAT0031862 Branchiostoma belcheri let-7a-2-3p 12 80
ppe-miR8133-5p MIMAT0031563 Prunus persica miR8133-5p 12 80
mmu-miR-8120 MIMAT0031426 Mus musculus miR-8120 12 80
prd-miR-7911b-3p MIMAT0030649 Panagrellus redivivus miR-7911b-3p 12 80
bdi-miR7709-3p MIMAT0030136 Brachypodium distachyon miR7709-3p 12 80
ipu-miR-455b MIMAT0029513 Ictalurus punctatus miR-455b 12 80
ipu-miR-455a MIMAT0029512 Ictalurus punctatus miR-455a 12 80
ipu-miR-210 MIMAT0029464 Ictalurus punctatus miR-210 12 80
gga-miR-7470-3p MIMAT0029095 Gallus gallus miR-7470-3p 12 80
oan-miR-7401-5p MIMAT0028944 Ornithorhynchus anatinus miR-7401-5p 12 80
ccr-miR-455 MIMAT0026301 Cyprinus carpio miR-455 12 80
ccr-miR-210 MIMAT0026268 Cyprinus carpio miR-210 12 80
gga-miR-6672-3p MIMAT0025774 Gallus gallus miR-6672-3p 12 80
gga-miR-3594-5p MIMAT0025641 Gallus gallus miR-3594-5p 12 80
mmu-miR-6539 MIMAT0025584 Mus musculus miR-6539 12 80
bta-miR-6526 MIMAT0025556 Bos taurus miR-6526 12 80
ptc-miR6448 MIMAT0025251 Populus trichocarpa miR6448 12 80
hvu-miR6206 MIMAT0024834 Hordeum vulgare miR6206 12 80
ggo-miR-210 MIMAT0024146 Gorilla gorilla miR-210 12 80
cgr-miR-455-5p MIMAT0023964 Cricetulus griseus miR-455-5p 12 80
cgr-miR-210-3p MIMAT0023849 Cricetulus griseus miR-210-3p 12 80
tca-miR-6015-5p MIMAT0023571 Tribolium castaneum miR-6015-5p 12 80
ola-miR-455-5p MIMAT0022607 Oryzias latipes miR-455-5p 12 80
hsa-miR-5582-5p MIMAT0022279 Homo sapiens miR-5582-5p 12 80
aca-miR-455-5p MIMAT0021964 Anolis carolinensis miR-455-5p 12 80
aca-miR-210-3p MIMAT0021868 Anolis carolinensis miR-210-3p 12 80
bdi-miR164a-3p MIMAT0027067 Brachypodium distachyon miR164a-3p 12 80
mmu-miR-5129-3p MIMAT0022987 Mus musculus miR-5129-3p 12 80
mmu-miR-5104 MIMAT0020611 Mus musculus miR-5104 12 80
cel-miR-4921 MIMAT0020127 Caenorhabditis elegans miR-4921 12 80
dme-miR-4908-3p MIMAT0020514 Drosophila melanogaster miR-4908-3p 12 80
oar-miR-3957-3p MIMAT0019326 Ovis aries miR-3957-3p 12 80
tca-miR-3866-5p MIMAT0018824 Tribolium castaneum miR-3866-5p 12 80
tca-miR-3857-5p MIMAT0018774 Tribolium castaneum miR-3857-5p 12 80
tca-miR-3804a-5p MIMAT0018624 Tribolium castaneum miR-3804a-5p 12 80
vvi-miR3638-5p MIMAT0018049 Vitis vinifera miR3638-5p 12 80
cin-miR-4034-5p MIMAT0016557 Ciona intestinalis miR-4034-5p 12 80
ppy-miR-1914 MIMAT0016242 Pongo pygmaeus miR-1914 12 80
ppy-miR-455-5p MIMAT0015899 Pongo pygmaeus miR-455-5p 12 80
ppy-miR-210 MIMAT0015801 Pongo pygmaeus miR-210 12 80
aly-miR164b-3p MIMAT0017452 Arabidopsis lyrata miR164b-3p 12 80
tgu-miR-455-5p MIMAT0014655 Taeniopygia guttata miR-455-5p 12 80
tgu-miR-1451-5p MIMAT0014451 Taeniopygia guttata miR-1451-5p 12 80
zma-miR164h-3p MIMAT0015320 Zea mays miR164h-3p 12 80
ssc-miR-455-5p MIMAT0022957 Sus scrofa miR-455-5p 12 80
osa-miR2867-5p MIMAT0013814 Oryza sativa miR2867-5p 12 80
mdo-miR-455-5p MIMAT0012752 Monodelphis domestica miR-455-5p 12 80
cte-miR-210b MIMAT0013572 Capitella teleta miR-210b 12 80
crm-miR-784-5p MIMAT0011575 Caenorhabditis remanei miR-784-5p 12 80
cel-miR-2207-3p MIMAT0011426 Caenorhabditis elegans miR-2207-3p 12 80
bfl-miR-210-3p MIMAT0009494 Branchiostoma floridae miR-210-3p 12 80
bfl-miR-31-3p MIMAT0019141 Branchiostoma floridae miR-31-3p 12 80
ptr-miR-210 MIMAT0008070 Pan troglodytes miR-210 12 80
hsa-miR-1914-5p MIMAT0007889 Homo sapiens miR-1914-5p 12 80
ssc-miR-210 MIMAT0007761 Sus scrofa miR-210 12 80
cfa-miR-455 MIMAT0006603 Canis familiaris miR-455 12 80
mml-miR-455-5p MIMAT0006339 Macaca mulatta miR-455-5p 12 80
mml-miR-210-3p MIMAT0006240 Macaca mulatta miR-210-3p 12 80
gga-miR-1695 MIMAT0007587 Gallus gallus miR-1695 12 80
gga-miR-1578 MIMAT0007439 Gallus gallus miR-1578 12 80
gga-miR-1562-3p MIMAT0007421 Gallus gallus miR-1562-3p 12 80
mdo-miR-1542-2-5p MIMAT0031061 Monodelphis domestica miR-1542-2-5p 12 80
mdo-miR-1542-1-5p MIMAT0026766 Monodelphis domestica miR-1542-1-5p 12 80
gga-miR-1451-5p MIMAT0007324 Gallus gallus miR-1451-5p 12 80
rno-miR-455-5p MIMAT0005316 Rattus norvegicus miR-455-5p 12 80
cbr-miR-784 MIMAT0004285 Caenorhabditis briggsae miR-784 12 80
cel-miR-784-5p MIMAT0004219 Caenorhabditis elegans miR-784-5p 12 80
bta-miR-455-5p MIMAT0003835 Bos taurus miR-455-5p 12 80
xtr-miR-455 MIMAT0003641 Xenopus tropicalis miR-455 12 80
xtr-miR-210 MIMAT0003624 Xenopus tropicalis miR-210 12 80
mmu-miR-455-5p MIMAT0003485 Mus musculus miR-455-5p 12 80
gga-miR-455-5p MIMAT0003364 Gallus gallus miR-455-5p 12 80
hsa-miR-455-5p MIMAT0003150 Homo sapiens miR-455-5p 12 80
tni-miR-210 MIMAT0003096 Tetraodon nigroviridis miR-210 12 80
fru-miR-210 MIMAT0003095 Fugu rubripes miR-210 12 80
tni-miR-455 MIMAT0003029 Tetraodon nigroviridis miR-455 12 80
fru-miR-455 MIMAT0003028 Fugu rubripes miR-455 12 80
dre-miR-455-5p MIMAT0001879 Danio rerio miR-455-5p 12 80
zma-miR164c-3p MIMAT0015139 Zea mays miR164c-3p 12 80
dre-miR-210-3p MIMAT0001281 Danio rerio miR-210-3p 12 80
rno-miR-210-3p MIMAT0000881 Rattus norvegicus miR-210-3p 12 80
mmu-miR-210-3p MIMAT0000658 Mus musculus miR-210-3p 12 80
hsa-miR-210-3p MIMAT0000267 Homo sapiens miR-210-3p 12 80
ath-miR164b-3p MIMAT0031878 Arabidopsis thaliana miR164b-3p 12 80
>ata-miR528-3p MIMAT0037193 Aegilops tauschii miR528-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>mmu-miR-9769-5p MIMAT0036461 Mus musculus miR-9769-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 8 ctgtgcc 2
>eca-miR-6529 MIMAT0034760 Equus caballus miR-6529
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>cfa-miR-6529 MIMAT0034278 Canis familiaris miR-6529
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>prd-miR-7969-5p MIMAT0030840 Panagrellus redivivus miR-7969-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 1 ctgtgcc 7
>oan-miR-7413-5p MIMAT0028974 Ornithorhynchus anatinus
miR-7413-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 8 ctgtgcc 2
>mml-miR-6529-3p MIMAT0028315 Macaca mulatta miR-6529-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>mmu-miR-7043-3p MIMAT0027991 Mus musculus miR-7043-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>mmu-miR-7005-3p MIMAT0027915 Mus musculus miR-7005-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 1 ctgtgcc 7
>hsa-miR-6889-3p MIMAT0027679 Homo sapiens miR-6889-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>bdi-miR528-3p MIMAT0027045 Brachypodium distachyon miR528-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>ssc-miR-2320-5p MIMAT0020597 Sus scrofa miR-2320-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 8 ctgtgcc 2
>hsv1-miR-H14-3p MIMAT0014692 Herpes Simplex miR-H14-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>zma-miR528b-3p MIMAT0015363 Zea mays miR528b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>zma-miR528a-3p MIMAT0015362 Zea mays miR528a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 2 ctgtgcc 8
>bta-miR-2320-5p MIMAT0011844 Bos taurus miR-2320-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctgtgcc 7
|||||||
Sbjct: 8 ctgtgcc 2
>ata-miR164b-3p MIMAT0037219 Aegilops tauschii miR164b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>oha-miR-455-5p MIMAT0036931 Ophiophagus hannah miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>oha-miR-210-3p MIMAT0036827 Ophiophagus hannah miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>tch-miR-210 MIMAT0036464 Tupaia chinensis miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>chi-miR-455-5p MIMAT0036241 Capra hircus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>efu-miR-19 MIMAT0034994 Eptesicus fuscus miR-19
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>efu-miR-9211 MIMAT0034802 Eptesicus fuscus miR-9211
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>cfa-miR-8868 MIMAT0034365 Canis familiaris miR-8868
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 3 ctgtgc 8
>gra-miR164a MIMAT0034113 Gossypium raimondii miR164a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>sly-miR164a-3p MIMAT0033974 Solanum lycopersicum miR164a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>atr-miR8565a MIMAT0033846 Amborella trichopoda miR8565a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 8 tgtgcc 3
>pxy-miR-8489b MIMAT0033775 Plutella xylostella miR-8489b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>ssa-miR-455-5p MIMAT0032643 Salmo salar miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>ssa-miR-210-3p MIMAT0032509 Salmo salar miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>bbe-miR-210-5p MIMAT0031645 Branchiostoma belcheri miR-210-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>bbe-let-7a-2-3p MIMAT0031862 Branchiostoma belcheri let-7a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>ppe-miR8133-5p MIMAT0031563 Prunus persica miR8133-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 3 ctgtgc 8
>mmu-miR-8120 MIMAT0031426 Mus musculus miR-8120
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>prd-miR-7911b-3p MIMAT0030649 Panagrellus redivivus
miR-7911b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>bdi-miR7709-3p MIMAT0030136 Brachypodium distachyon miR7709-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>ipu-miR-455b MIMAT0029513 Ictalurus punctatus miR-455b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>ipu-miR-455a MIMAT0029512 Ictalurus punctatus miR-455a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>ipu-miR-210 MIMAT0029464 Ictalurus punctatus miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>gga-miR-7470-3p MIMAT0029095 Gallus gallus miR-7470-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 3 ctgtgc 8
>oan-miR-7401-5p MIMAT0028944 Ornithorhynchus anatinus
miR-7401-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>ccr-miR-455 MIMAT0026301 Cyprinus carpio miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>ccr-miR-210 MIMAT0026268 Cyprinus carpio miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>gga-miR-6672-3p MIMAT0025774 Gallus gallus miR-6672-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 8 tgtgcc 3
>gga-miR-3594-5p MIMAT0025641 Gallus gallus miR-3594-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 6 ctgtgc 1
>mmu-miR-6539 MIMAT0025584 Mus musculus miR-6539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 6 ctgtgc 1
>bta-miR-6526 MIMAT0025556 Bos taurus miR-6526
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 3 ctgtgc 8
>ptc-miR6448 MIMAT0025251 Populus trichocarpa miR6448
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 8 tgtgcc 3
>hvu-miR6206 MIMAT0024834 Hordeum vulgare miR6206
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 6 tgtgcc 1
>ggo-miR-210 MIMAT0024146 Gorilla gorilla miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>cgr-miR-455-5p MIMAT0023964 Cricetulus griseus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>cgr-miR-210-3p MIMAT0023849 Cricetulus griseus miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>tca-miR-6015-5p MIMAT0023571 Tribolium castaneum miR-6015-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 6 tgtgcc 1
>ola-miR-455-5p MIMAT0022607 Oryzias latipes miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>hsa-miR-5582-5p MIMAT0022279 Homo sapiens miR-5582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 8 tgtgcc 3
>aca-miR-455-5p MIMAT0021964 Anolis carolinensis miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>aca-miR-210-3p MIMAT0021868 Anolis carolinensis miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>bdi-miR164a-3p MIMAT0027067 Brachypodium distachyon miR164a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>mmu-miR-5129-3p MIMAT0022987 Mus musculus miR-5129-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>mmu-miR-5104 MIMAT0020611 Mus musculus miR-5104
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>cel-miR-4921 MIMAT0020127 Caenorhabditis elegans miR-4921
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>dme-miR-4908-3p MIMAT0020514 Drosophila melanogaster
miR-4908-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>oar-miR-3957-3p MIMAT0019326 Ovis aries miR-3957-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 8 ctgtgc 3
>tca-miR-3866-5p MIMAT0018824 Tribolium castaneum miR-3866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 8 ctgtgc 3
>tca-miR-3857-5p MIMAT0018774 Tribolium castaneum miR-3857-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>tca-miR-3804a-5p MIMAT0018624 Tribolium castaneum miR-3804a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 7 tgtgcc 2
>vvi-miR3638-5p MIMAT0018049 Vitis vinifera miR3638-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>cin-miR-4034-5p MIMAT0016557 Ciona intestinalis miR-4034-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 6 ctgtgc 1
>ppy-miR-1914 MIMAT0016242 Pongo pygmaeus miR-1914
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 3 ctgtgc 8
>ppy-miR-455-5p MIMAT0015899 Pongo pygmaeus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>ppy-miR-210 MIMAT0015801 Pongo pygmaeus miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>aly-miR164b-3p MIMAT0017452 Arabidopsis lyrata miR164b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>tgu-miR-455-5p MIMAT0014655 Taeniopygia guttata miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>tgu-miR-1451-5p MIMAT0014451 Taeniopygia guttata miR-1451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 8 ctgtgc 3
>zma-miR164h-3p MIMAT0015320 Zea mays miR164h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>ssc-miR-455-5p MIMAT0022957 Sus scrofa miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>osa-miR2867-5p MIMAT0013814 Oryza sativa miR2867-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>mdo-miR-455-5p MIMAT0012752 Monodelphis domestica miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>cte-miR-210b MIMAT0013572 Capitella teleta miR-210b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>crm-miR-784-5p MIMAT0011575 Caenorhabditis remanei miR-784-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 7 tgtgcc 2
>cel-miR-2207-3p MIMAT0011426 Caenorhabditis elegans miR-2207-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 8 ctgtgc 3
>bfl-miR-210-3p MIMAT0009494 Branchiostoma floridae miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>bfl-miR-31-3p MIMAT0019141 Branchiostoma floridae miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>ptr-miR-210 MIMAT0008070 Pan troglodytes miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>hsa-miR-1914-5p MIMAT0007889 Homo sapiens miR-1914-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 3 ctgtgc 8
>ssc-miR-210 MIMAT0007761 Sus scrofa miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>cfa-miR-455 MIMAT0006603 Canis familiaris miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>mml-miR-455-5p MIMAT0006339 Macaca mulatta miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>mml-miR-210-3p MIMAT0006240 Macaca mulatta miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>gga-miR-1695 MIMAT0007587 Gallus gallus miR-1695
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 8 ctgtgc 3
>gga-miR-1578 MIMAT0007439 Gallus gallus miR-1578
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>gga-miR-1562-3p MIMAT0007421 Gallus gallus miR-1562-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 1 tgtgcc 6
>mdo-miR-1542-2-5p MIMAT0031061 Monodelphis domestica
miR-1542-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 8 tgtgcc 3
>mdo-miR-1542-1-5p MIMAT0026766 Monodelphis domestica
miR-1542-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 8 tgtgcc 3
>gga-miR-1451-5p MIMAT0007324 Gallus gallus miR-1451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ctgtgc 6
||||||
Sbjct: 8 ctgtgc 3
>rno-miR-455-5p MIMAT0005316 Rattus norvegicus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>cbr-miR-784 MIMAT0004285 Caenorhabditis briggsae miR-784
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 7 tgtgcc 2
>cel-miR-784-5p MIMAT0004219 Caenorhabditis elegans miR-784-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtgcc 7
||||||
Sbjct: 7 tgtgcc 2
>bta-miR-455-5p MIMAT0003835 Bos taurus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>xtr-miR-455 MIMAT0003641 Xenopus tropicalis miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>xtr-miR-210 MIMAT0003624 Xenopus tropicalis miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>mmu-miR-455-5p MIMAT0003485 Mus musculus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>gga-miR-455-5p MIMAT0003364 Gallus gallus miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>hsa-miR-455-5p MIMAT0003150 Homo sapiens miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>tni-miR-210 MIMAT0003096 Tetraodon nigroviridis miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>fru-miR-210 MIMAT0003095 Fugu rubripes miR-210
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>tni-miR-455 MIMAT0003029 Tetraodon nigroviridis miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>fru-miR-455 MIMAT0003028 Fugu rubripes miR-455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>dre-miR-455-5p MIMAT0001879 Danio rerio miR-455-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>zma-miR164c-3p MIMAT0015139 Zea mays miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
>dre-miR-210-3p MIMAT0001281 Danio rerio miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>rno-miR-210-3p MIMAT0000881 Rattus norvegicus miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>mmu-miR-210-3p MIMAT0000658 Mus musculus miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>hsa-miR-210-3p MIMAT0000267 Homo sapiens miR-210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ctgtgc 6
||||||
Sbjct: 1 ctgtgc 6
>ath-miR164b-3p MIMAT0031878 Arabidopsis thaliana miR164b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtgcc 7
||||||
Sbjct: 3 tgtgcc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 166
Number of extensions: 150
Number of successful extensions: 115
Number of sequences better than 100.0: 115
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 115
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
