BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bta-miR-6120-5p MIMAT0024590 Bos taurus miR-6120-5p 16 6.9
eca-miR-9047 MIMAT0034591 Equus caballus miR-9047 14 27
sma-miR-8420-5p MIMAT0033544 Schistosoma mansoni miR-8420-5p 14 27
bbe-miR-4873-5p MIMAT0031696 Branchiostoma belcheri miR-4873-5p 14 27
mdo-miR-7384-3p MIMAT0028825 Monodelphis domestica miR-7384-3p 14 27
sbi-miR5568c-5p MIMAT0026400 Sorghum bicolor miR5568c-5p 14 27
hvu-miR6197 MIMAT0024823 Hordeum vulgare miR6197 14 27
bfl-miR-4873 MIMAT0020452 Branchiostoma floridae miR-4873 14 27
cin-miR-4006g-5p MIMAT0016484 Ciona intestinalis miR-4006g-5p 14 27
bmo-miR-3215 MIMAT0015395 Bombyx mori miR-3215 14 27
>bta-miR-6120-5p MIMAT0024590 Bos taurus miR-6120-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctgttccc 8
||||||||
Sbjct: 1 ctgttccc 8
>eca-miR-9047 MIMAT0034591 Equus caballus miR-9047
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgttccc 8
|||||||
Sbjct: 1 tgttccc 7
>sma-miR-8420-5p MIMAT0033544 Schistosoma mansoni miR-8420-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgttccc 8
|||||||
Sbjct: 8 tgttccc 2
>bbe-miR-4873-5p MIMAT0031696 Branchiostoma belcheri miR-4873-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgttccc 8
|||||||
Sbjct: 1 tgttccc 7
>mdo-miR-7384-3p MIMAT0028825 Monodelphis domestica miR-7384-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgttccc 8
|||||||
Sbjct: 8 tgttccc 2
>sbi-miR5568c-5p MIMAT0026400 Sorghum bicolor miR5568c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgttcc 7
|||||||
Sbjct: 2 ctgttcc 8
>hvu-miR6197 MIMAT0024823 Hordeum vulgare miR6197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgttcc 7
|||||||
Sbjct: 2 ctgttcc 8
>bfl-miR-4873 MIMAT0020452 Branchiostoma floridae miR-4873
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgttccc 8
|||||||
Sbjct: 1 tgttccc 7
>cin-miR-4006g-5p MIMAT0016484 Ciona intestinalis miR-4006g-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgttccc 8
|||||||
Sbjct: 7 tgttccc 1
>bmo-miR-3215 MIMAT0015395 Bombyx mori miR-3215
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctgttcc 7
|||||||
Sbjct: 2 ctgttcc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 145
Number of extensions: 134
Number of successful extensions: 81
Number of sequences better than 100.0: 10
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)